Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003987 [exp] 46 / 3e-06 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10015039 [exp] 46 / 4e-06 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10025280 [exp] 0 / 1 AT3G53500 184 / 2e-57 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G081700 [exp] 0 / 1 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.006G215200 [exp] 0 / 1 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009067 pacid=23172412 polypeptide=Lus10009067 locus=Lus10009067.g ID=Lus10009067.BGIv1.0 annot-version=v1.0 ATGACACATACGTGTACTCTAGTCGGTTGTTCTACCTCTGGAACTGAAGAGAAACTCCAGCTGGTGGTCGACGAACCAAACGAGAACTACAACTTTGAAT CCGAGATTGGTTCTTTCTTCTTCTACCAAGGTGAGAAACGGAAAGAGCTGATTAGGTTTTGCAGATGCGACCCGAGGGATGCTGATGATGCAAGGTATCA CTTGGATGGCAGAGAGGTCGATGGAAGTCGCCTCATTGTGGAAATAGCAAAAGGGGTACTCGAGGTTCTCGAGAATATGTGGGAAGGGGTCCGGCTCCTG GATCTGGACGGTGTTTCAACTGCGGTATTGATGGCCACTGGGCTCGCGATCGCAAAGCTGGCGATAGGAAGAATAAATGCTACCGATGCGGGGAAAGTGC AAGAATACTATACCCTTTCATACATGAGCCGACCCTCTGTTTTATTCACCTTCTCCTTCCTACGGAATTTTGTTGTATTCTCCTTCTGTGTCCCGGTACT TGGGCAGTGA
AA sequence Show only first row Show all	>Lus10009067 pacid=23172412 polypeptide=Lus10009067 locus=Lus10009067.g ID=Lus10009067.BGIv1.0 annot-version=v1.0 MTHTCTLVGCSTSGTEEKLQLVVDEPNENYNFESEIGSFFFYQGEKRKELIRFCRCDPRDADDARYHLDGREVDGSRLIVEIAKGVLEVLENMWEGVRLL DLDGVSTAVLMATGLAIAKLAIGRINATDAGKVQEYYTLSYMSRPSVLFTFSFLRNFVVFSFCVPVLGQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10009067 [exp]	0	1
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10039937 [exp]	2.0	0.9018
AT5G61830			NAD(P)-binding Rossmann-fold s...		Lus10032525 [exp]	2.0	0.9295
AT5G57700			BNR/Asp-box repeat family prot...		Lus10006994 [exp]	2.4	0.8954
AT1G65420		NPQ7	NONPHOTOCHEMICAL QUENCHING 7, ...		Lus10027674 [exp]	2.6	0.8919
AT5G43430		ETFBETA	electron transfer flavoprotein...		Lus10022185 [exp]	2.8	0.9149
AT5G10700			Peptidyl-tRNA hydrolase II (PT...		Lus10020143 [exp]	3.2	0.8986
					Lus10007667 [exp]	5.5	0.8895
AT1G10890			unknown protein		Lus10043141 [exp]	7.2	0.8793
AT3G05870		APC11	anaphase-promoting complex/cyc...		Lus10015126 [exp]	8.7	0.8701
AT5G59140			BTB/POZ domain-containing prot...		Lus10040746 [exp]	9.9	0.8909

Compare expression of checked genes

Lus10009067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.