Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37330 417 / 6e-149 ALS3 aluminum sensitive 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025278 [exp] 124 / 1e-36 AT2G37330 110 / 1e-31 aluminum sensitive 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082100 [exp] 441 / 2e-158 AT2G37330 437 / 9e-157 aluminum sensitive 3 (.1) Potri.006G215700 [exp] 426 / 4e-152 AT2G37330 419 / 1e-149 aluminum sensitive 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03649 [flax] [poplar] UPF0014 Uncharacterised protein family (UPF0014)
Representative CDS sequence Show only first row Show all	>Lus10009069 pacid=23172408 polypeptide=Lus10009069 locus=Lus10009069.g ID=Lus10009069.BGIv1.0 annot-version=v1.0 ATGTCGTCGTCGGATTCAATAGACTGGGAATGGTTGACCCAGTTCGGCAAAGGAATGATGAAGCCACTAGCTGCCACGGCGGTGGTTGCGGTGGCGGTAG TACTGTCCTACTTTCAAAAGCTGGGTTTGGAAGTAGAGATGGCTTACTCCGTCTTCAGGGCGTTTCTTCAGTTATCCGTCATCGGGTTTGTGCTTCAGTT CATCTTTACTCAGGAAAAAATCATATGGATCCTTCTTGCGTACCTTTTCATGGTCACCGTCGCCGGATACACGGCGGGGCAACGTGCAAAACATGTGCCC AGAGGGAAATACGTCGCCGGAGCGTCCATTCTGGTCGGGACGGCGGTTACGATGTTTCTCCTCGTTTTGCTCGACGTCTTCCCGTTCACTCCGCGTTACA TAATCCCTGTCGCCGGGATGATGGTCGGGAACGCCATGACTGTCACTGGAGTCACCATGAAGAGGCTCCGTGATGACATCAAAGTCCAATTGATCCTGGT TGAAACAGCGTTGGCACTGGGAGCGACGCCACGTCAGGCGACACACGAGCAGGTGAAGAGGGCGTTGGTGATAGCACTGTCGCCGGTGCTGGACAATGCT AAGACGGTGGGTCTGATTTCGTTGCCCGGAGCAATGACGGGGCTCATAATGGGAGGAGCTTCACCGTTGGAGGCGATCCAGCTGCAGATCGTGGTTATGA ATATGCTCATCGGAGCGTCGACAGTCAGCAGCATCATGTCTACTTATATGTGTTGGCCTGCCTTCTTCACCAAAGCTTATCAGCTGGAAACCACTGTATT TGCCTCCGATTGA
AA sequence Show only first row Show all	>Lus10009069 pacid=23172408 polypeptide=Lus10009069 locus=Lus10009069.g ID=Lus10009069.BGIv1.0 annot-version=v1.0 MSSSDSIDWEWLTQFGKGMMKPLAATAVVAVAVVLSYFQKLGLEVEMAYSVFRAFLQLSVIGFVLQFIFTQEKIIWILLAYLFMVTVAGYTAGQRAKHVP RGKYVAGASILVGTAVTMFLLVLLDVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKVQLILVETALALGATPRQATHEQVKRALVIALSPVLDNA KTVGLISLPGAMTGLIMGGASPLEAIQLQIVVMNMLIGASTVSSIMSTYMCWPAFFTKAYQLETTVFASD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37330		ALS3	aluminum sensitive 3 (.1)		Lus10009069 [exp]	0	1
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10036153 [exp]	19.5	0.7631
AT2G35612			unknown protein		Lus10034745 [exp]	46.9	0.7189
AT1G51340			MATE efflux family protein (.1...		Lus10016412 [exp]	59.6	0.7283
AT4G10770		ATOPT7	ARABIDOPSIS THALIANA OLIGOPEPT...		Lus10028445 [exp]	69.1	0.7049
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10026329 [exp]	141.9	0.7036
AT4G18010		AT5PTASE2, IP5P...	INOSITOL\(1,4,5\)P3 5-PHOSPHAT...		Lus10003010 [exp]	175.1	0.6878
AT2G26650		AKT1, ATAKT1	K+ transporter 1, K+ transport...		Lus10019442 [exp]	203.8	0.6826
AT5G38200			Class I glutamine amidotransfe...		Lus10009152 [exp]	213.7	0.6695
AT2G37570		SLT1	sodium- and lithium-tolerant 1...		Lus10024406 [exp]	219.8	0.6814
AT1G78780			pathogenesis-related family pr...		Lus10028620 [exp]	243.3	0.6775

Compare expression of checked genes

Lus10009069 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.