Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G37320 483 / 8e-168 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G40720 291 / 2e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G02750 280 / 6e-86 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 277 / 4e-85 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22070 277 / 9e-85 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G56570 273 / 1e-84 PGN PENTATRICOPEPTIDE REPEAT PROTEIN FOR GERMINATION ON NaCl, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 278 / 3e-84 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 265 / 4e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G50270 265 / 6e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G03880 266 / 7e-82 REME1 required for efficiency of mitochondrial editing 1, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025277 [exp] 934 / 0 AT2G37320 509 / 3e-178 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015898 [exp] 288 / 5e-89 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030581 [exp] 290 / 8e-87 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030908 [exp] 290 / 1e-86 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10009269 [exp] 277 / 7e-86 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013991 [exp] 281 / 1e-84 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 278 / 1e-83 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 274 / 2e-83 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10018978 [exp] 277 / 7e-83 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082200 [exp] 606 / 0 AT2G37320 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G047800 [exp] 298 / 2e-91 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G104700 [exp] 291 / 2e-90 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 289 / 1e-89 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.014G012500 [exp] 288 / 2e-89 AT3G49710 995 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 284 / 3e-88 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 288 / 7e-87 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 283 / 4e-86 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G006800 [exp] 279 / 3e-85 AT3G16610 687 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.016G075000 [exp] 273 / 3e-84 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009070 pacid=23172411 polypeptide=Lus10009070 locus=Lus10009070.g ID=Lus10009070.BGIv1.0 annot-version=v1.0 ATGGTTGTTGTTTCGCTTCGTAACACCGTCCATTACCTTCGAAATCTGCAACACCATAGACCTTTCTCTTATCACAGAGTCACCGGCGAAAGACAGAGGA GGCGCGTAGACAAGGCACTCAGAATTCTAGACATCGTATCTACCGACAGAAAAGATACAGTCGTCAGAGGCGGAGGAAACCATCTGCGTCTCATCGAGGA CTTCCTTCGACCGGATTTTGTTCAAAGCCACGAGAATTCCCCAATCCCCAAGGTTGAAACTGCCGCAGTCGAGAATGATGAAGAATTCGGAGTCTTCGGT GCAGTTGTCCTGTCAAATGCCGTGAGCTCATGCGTGTCAGTCCGCGATCTTCGCGGAGGGGTTCAGTATCATTGCTCGGCTATTGCTACTGGATTCGTCG CAAATGCATACGTGGGGACTTCTCTGGTCACATTGTACAGTAAATGCGGCGAACTGAGTAATGCACGCAAGGTGTTTGACGAAATGCCAGTAAGAAATGT GGTGTCCTGGACGGCAATTATTTCCGCGTTTGCTCAGGAATGGTACGTTGATGTGTGCTTGGAGCTCTACTCCGAGATGAGAAATTCTTCACTCGAACCT AACGATTTCACCTTCACTAGTCTATTGAGTGCTTGCTCCGGCAGTGGAGCACTTGGGCAAGGGAGAAGTGCTCATTGCCAAGCTGTTCAATTGGGATTTG ATTCATATTTACACGTCGCCAATTCCCTAATCTCCATGTACTGCAAATGTGGTAGCCTTGAAGATGCTTTATTTATATTCAAGGACATGGGTGATGATAA CAAGAGAGATATCGTGTCATGGAACTCAATGATTGCAGGATATGCTCAACACGGTCTGGCCGTGGAAGCAATTGAGCTTTTCGAAGAAATGAAGAAACAA GGAAAGCCGAAACCGGATACCTTTACTTTCCTTGGTGTTGTATCTTCATGTCGTCATGCAGGTTTCGTTGAGAAGGGGAAGAAGTATTTTAATTCAATGG AAGAGTACAGTGTGATGCCGGAGCTAGACCATTACGCATGTCTGGTTGACCTCCTTGGCCGCGCTGGGTTGCTGGAAGAGGCTTGGGGTGTCATTGAACG GATGCCGGTACCTGCAAATGCTGTTATATGGGGATCACTTCTTTCGTCGTGCCGAAATCATGGAAGTGGTCTTGTTGGGATACAGGCTGCAGAGCAAAAG CTAGCAATGGAACCGGAATGCGCTGCAACATATCTGCAGCTTGCGAATTTGTATGCTGGCATGAATTGTTGGGGTGAGGCTGCTAGAGTGAGGAAACTGA TGAAAGATGGGGCGCTTAAGACTAATCCCGGGCATAGTTGGATTGAGATAAAGAACGTTGTGAAAAGATTCAGAGCAGAAGATGGGTCCAGCGCAAGGTT TGGTGAGCTGCTTGAGATTTTAGGTTGTCTAGCTGACAATATGAGAACACTAGGATTTGTGCCTGAGATATGA
AA sequence Show only first row Show all	>Lus10009070 pacid=23172411 polypeptide=Lus10009070 locus=Lus10009070.g ID=Lus10009070.BGIv1.0 annot-version=v1.0 MVVVSLRNTVHYLRNLQHHRPFSYHRVTGERQRRRVDKALRILDIVSTDRKDTVVRGGGNHLRLIEDFLRPDFVQSHENSPIPKVETAAVENDEEFGVFG AVVLSNAVSSCVSVRDLRGGVQYHCSAIATGFVANAYVGTSLVTLYSKCGELSNARKVFDEMPVRNVVSWTAIISAFAQEWYVDVCLELYSEMRNSSLEP NDFTFTSLLSACSGSGALGQGRSAHCQAVQLGFDSYLHVANSLISMYCKCGSLEDALFIFKDMGDDNKRDIVSWNSMIAGYAQHGLAVEAIELFEEMKKQ GKPKPDTFTFLGVVSSCRHAGFVEKGKKYFNSMEEYSVMPELDHYACLVDLLGRAGLLEEAWGVIERMPVPANAVIWGSLLSSCRNHGSGLVGIQAAEQK LAMEPECAATYLQLANLYAGMNCWGEAARVRKLMKDGALKTNPGHSWIEIKNVVKRFRAEDGSSARFGELLEILGCLADNMRTLGFVPEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37320			Tetratricopeptide repeat (TPR)...		Lus10009070 [exp]	0	1
AT1G13410			Tetratricopeptide repeat (TPR)...		Lus10021069 [exp]	1.0	0.9282
AT1G62260		MEF9	mitochondrial editing factor 9...		Lus10012514 [exp]	1.4	0.9157
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10004373 [exp]	2.0	0.8906
AT1G03540			Pentatricopeptide repeat (PPR-...		Lus10033713 [exp]	2.4	0.9081
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10028593 [exp]	3.5	0.8811
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	5.3	0.8703
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10002092 [exp]	5.5	0.8338
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10007356 [exp]	5.7	0.8525
AT1G05750		PDE247, CLB19	pigment defective 247, Tetratr...		Lus10013341 [exp]	5.9	0.8888
AT1G80480		PTAC17	plastid transcriptionally acti...		Lus10025665 [exp]	6.0	0.8524

Compare expression of checked genes

Lus10009070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.