Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02500 560 / 0 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT3G09440 559 / 0 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02490 557 / 0 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT1G56410 555 / 0 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT3G12580 545 / 0 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 503 / 2e-176 HSP70B heat shock protein 70B (.1) AT5G42020 387 / 2e-131 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 387 / 1e-130 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 382 / 6e-129 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT4G37910 285 / 5e-91 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024393 [exp] 588 / 0 AT5G02310 1770 / 0.0 proteolysis 6 (.1) Lus10025276 [exp] 587 / 0 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 586 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 581 / 0 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10005953 [exp] 547 / 0 AT5G02500 1207 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10002319 [exp] 518 / 0 AT3G12580 1160 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Lus10026099 [exp] 500 / 6e-180 AT1G16030 504 / 1e-176 heat shock protein 70B (.1) Lus10021345 [exp] 375 / 1e-127 AT5G28540 843 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Lus10017306 [exp] 380 / 4e-127 AT5G28540 1169 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G054600 [exp] 568 / 0 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 563 / 0 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 563 / 0 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G206600 [exp] 562 / 0 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205800 [exp] 560 / 0 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 529 / 0 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 515 / 0 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 499 / 5e-175 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 447 / 1e-154 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G087500 [exp] 385 / 4e-130 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10009071 pacid=23172426 polypeptide=Lus10009071 locus=Lus10009071.g ID=Lus10009071.BGIv1.0 annot-version=v1.0 ATGGCCGGTAAAGGAGAGGGTCCTGCTATCGGTATCGATCTCGGTACCACTTATTCTTGCGTCGGTGTCTGGCAGCATGATCGCGTTGAGATCATCGCCA ATGACCAGGGTAACCGGACTACCCCGTCGTACGTCGGATTCACTGATTCCGAGCGTTTGATCGGTGACGCCGCCAAGAACCAGGTCGCCATGAACCCCAT CAACACTGTTTTCGATGCTAAGAGGTTGATCGGTAGGCGTTTCAGCGACGCCTCAGTCCAAAGTGACATCAAGTTGTGGCCTTTTAAGCTTATCCCCGGC GCTGCTGATAAGCCTATGATTGTTGTCAACTACAAGGGCGAGGAGAAGCAGTTTGCTGCCGAGGAAATTTCTTCCATGGTTTTGATCAAGATGCGTGAGA TCGCTGAGGCTTTCTTAGGTACTACCGTGAAGAATGCCGTTGTTACAGTTCCTGCCTACTTCAACGATTCTCAGCGTCAAGCTACCAAGGATGCTGGTGT CATTGCTGGTCTTAATGTCATGCGAATCATCAACGAACCCACAGCTGCTGCCATTGCCTACGGTCTTGACAAGAAGGCCACCAGCGTTGGAGAGAAGAAC GTGCTGATCTTTGATCTTGGCGGTGGTACTTTCGATGTGTCCCTCCTCACCATTGAGGAAGGTATCTTCGAGGTTAAGGCCACAGCTGGAGACACCCATC TTGGAGGGGAAGACTTCGACAACAGAATGGTCAACCACTTCGTCCAGGAGTTCAAGAGGAAGCACAAGAAGGACATCTCTGGAAATCCCAGAGCCCTCAG AAGATTGAGGACATCTTGCGAGAGGGCCAAAAGAACTCTCTACTCCACCGCGCAAAAAAAAAAGATTTCTTCAACGGCAAGGAATTGTGCAAGAGCATTA ACCCTGACGAGGCTGTTGCGTATGGTGCTGCTGTCCAAGCTGCCATCTTGA
AA sequence Show only first row Show all	>Lus10009071 pacid=23172426 polypeptide=Lus10009071 locus=Lus10009071.g ID=Lus10009071.BGIv1.0 annot-version=v1.0 MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVGFTDSERLIGDAAKNQVAMNPINTVFDAKRLIGRRFSDASVQSDIKLWPFKLIPG AADKPMIVVNYKGEEKQFAAEEISSMVLIKMREIAEAFLGTTVKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKN VLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKHKKDISGNPRALRRLRTSCERAKRTLYSTAQKKKISSTARNCARAL TLTRLLRMVLLSKLPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09440			Heat shock protein 70 (Hsp 70)...		Lus10009071 [exp]	0	1
AT5G11430			SPOC domain / Transcription el...		Lus10008108 [exp]	5.4	0.8200
AT5G11430			SPOC domain / Transcription el...		Lus10013146 [exp]	16.6	0.7712
AT5G62620			Galactosyltransferase family p...		Lus10036685 [exp]	25.6	0.7478
AT1G24490		ALB4, ARTEMIS	ARABIDOPSIS THALIANA ENVELOPE ...		Lus10011398 [exp]	30.9	0.6556
AT5G02310		PRT6, CER3	proteolysis 6 (.1)		Lus10024393 [exp]	32.5	0.7368
AT3G61690			nucleotidyltransferases (.1)		Lus10030267 [exp]	34.9	0.7298
AT1G22960			Pentatricopeptide repeat (PPR)...		Lus10000364 [exp]	35.2	0.7191
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Lus10017823 [exp]	41.0	0.7003
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Lus10012008 [exp]	78.2	0.6574
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10001588 [exp]	81.4	0.6428

Compare expression of checked genes

Lus10009071 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.