Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G02500 194 / 1e-60 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 192 / 5e-59 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 185 / 1e-56 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 181 / 7e-55 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) AT1G16030 162 / 6e-48 HSP70B heat shock protein 70B (.1) AT1G56410 149 / 3e-43 HSP70T-1, ERD2 HEAT SHOCK PROTEIN 70T-1, EARLY-RESPONSIVE TO DEHYDRATION 2, heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 102 / 3e-26 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G28540 98 / 1e-24 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT1G09080 76 / 6e-17 BIP3 binding protein 3, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G49910 41 / 8e-05 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025276 [exp] 251 / 2e-81 AT5G02500 1233 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025354 [exp] 239 / 3e-78 AT5G02500 799 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025333 [exp] 242 / 5e-78 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10025336 [exp] 239 / 2e-77 AT5G02500 953 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10024407 [exp] 236 / 2e-74 AT5G02500 1236 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10023418 [exp] 187 / 2e-57 AT5G02500 1033 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Lus10026100 [exp] 166 / 7e-53 AT1G16030 335 / 2e-112 heat shock protein 70B (.1) Lus10041615 [exp] 166 / 2e-51 AT1G16030 581 / 0.0 heat shock protein 70B (.1) Lus10029455 [exp] 168 / 2e-50 AT5G02500 932 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G206600 [exp] 201 / 1e-62 AT3G12580 1181 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.010G205700 [exp] 197 / 9e-61 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054000 [exp] 196 / 1e-60 AT5G02500 1160 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054700 [exp] 186 / 1e-57 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205800 [exp] 187 / 2e-57 AT5G02500 1142 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.008G054600 [exp] 184 / 6e-56 AT5G02500 1149 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.001G042600 [exp] 168 / 5e-50 AT3G12580 1061 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.001G042700 [exp] 163 / 3e-48 AT3G12580 1058 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.003G184000 [exp] 160 / 3e-47 AT3G12580 1040 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1) Potri.008G054900 [exp] 123 / 8e-34 AT3G12580 947 / 0.0 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10009072 pacid=23172403 polypeptide=Lus10009072 locus=Lus10009072.g ID=Lus10009072.BGIv1.0 annot-version=v1.0 ATGGTTCAGGAGGCAGAGAAATACAAATCCGAAGATGAAGAGCACAAGAAAAAGGTTGAAGCCAAGAACGCGCTTGAGAACTATTCCTACAACATGAGGA ACACAATTAAGGACGAGAAGATCGGGGAGAAGCTACCCGCTGCAGACAAGAAGAAGATCGAGGATGCTATCGAGGCATCCATCCAGTGGTTGGATGCGAA CCAGCTGGCAGAGGCTGACGAGTTTGAGGATAAGATGAAGGAGTTGGAGAGCCTGTGCAACCCCATCATTGCGAAGATGTATCAGGGAGCTGGAGGTGAA GGAGCTCCCATGGATGATGATGATGATGTCCCTGCAGGTGCCTGCAGCGGTGCCGGTCCCAAGATTGAAGAGGTGGACTAA
AA sequence Show only first row Show all	>Lus10009072 pacid=23172403 polypeptide=Lus10009072 locus=Lus10009072.g ID=Lus10009072.BGIv1.0 annot-version=v1.0 MVQEAEKYKSEDEEHKKKVEAKNALENYSYNMRNTIKDEKIGEKLPAADKKKIEDAIEASIQWLDANQLAEADEFEDKMKELESLCNPIIAKMYQGAGGE GAPMDDDDDVPAGACSGAGPKIEEVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10009072 [exp]	0	1
AT2G37660			NAD(P)-binding Rossmann-fold s...		Lus10024383 [exp]	13.2	0.6465
AT5G59600			Tetratricopeptide repeat (TPR)...		Lus10040779 [exp]	23.2	0.5915
					Lus10038177 [exp]	23.5	0.6313
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Lus10034583 [exp]	24.4	0.6585
AT2G31420	B3		Domain of unknown function (DU...		Lus10009354 [exp]	24.9	0.6404
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Lus10037979 [exp]	29.4	0.6203
AT5G63140		ATPAP29, PAP29	purple acid phosphatase 29 (.1...		Lus10009863 [exp]	36.2	0.6457
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Lus10014940 [exp]	51.5	0.6342
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Lus10005095 [exp]	56.1	0.5541
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000492 [exp]	58.3	0.5392

Compare expression of checked genes

Lus10009072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.