Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45850 988 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G28620 955 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G37420 670 / 0 ATP binding microtubule motor family protein (.1) AT2G36200 658 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G19050 234 / 2e-62 POK2 phragmoplast orienting kinesin 2 (.1) AT5G60930 232 / 2e-62 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 230 / 4e-62 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 229 / 7e-62 KICP-02 ATP binding microtubule motor family protein (.1) AT3G17360 228 / 8e-61 POK1 phragmoplast orienting kinesin 1 (.1) AT1G59540 224 / 8e-61 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025275 [exp] 1855 / 0 AT3G45850 981 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 1001 / 0 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10036146 [exp] 988 / 0 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025304 [exp] 705 / 0 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 704 / 0 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10021340 [exp] 659 / 0 AT2G36200 1499 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10014216 [exp] 659 / 0 AT2G36200 1464 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10017016 [exp] 598 / 0 AT2G36200 1381 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10027934 [exp] 239 / 2e-64 AT3G19050 1521 / 0.0 phragmoplast orienting kinesin 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G082400 [exp] 1149 / 0 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 1033 / 0 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.001G233700 [exp] 1013 / 0 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G082900 [exp] 712 / 0 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G077800 [exp] 657 / 0 AT2G36200 1476 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G210700 [exp] 654 / 0 AT2G36200 1442 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 253 / 3e-69 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G106000 [exp] 240 / 7e-65 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G145800 [exp] 241 / 1e-64 AT3G19050 1765 / 0.0 phragmoplast orienting kinesin 2 (.1) Potri.002G123500 [exp] 233 / 4e-63 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10009073 pacid=23172419 polypeptide=Lus10009073 locus=Lus10009073.g ID=Lus10009073.BGIv1.0 annot-version=v1.0 ATGGATCATTCCCACTCTCAGCAGCTAAGGAGATCCACCATGATCCCGGTTTCTCCTCCTTCTCACACCCCGCGGACAAGCCAGCGAGGGCTGAGAGACT CGGTTTCGTTGGATGGGAATTCGAGCAATAGTAAGAATGACAAAGGGGTCAATGTGCAGGTCCTTCTACGTTGTAGGCCGTTGAATCCGGATGAGAAGCA GCTGGTGTCCCCTGCAGTGATTTCTTGTAATGAGAAGAAGGGAATAGTGACTTTGTTCCAGAACACAGCTCACAAACAGATAGATAAGAACTATCAATTT GACAAGGTGTTTGGCCCTACATGTGAGCAGAAGCTTCTGTTTGATTCAGCAGTGACTCCTATTGTCAATGAAGTTCTTGAGGGTTATAATTGTACCATTT TTGCTTATGGACAGACTGGAACGGGTAAAACTTACACAATGGAAGGAGGGATGGTGGCTGAGGATGGAGAGTTTCCAAGTGATGCAGGAATCATCCCACG AGCTGTTCAGCAGATATTTGAGGTTCTTGAGGCCAGAAGTGAAGACTATAGCATGAAAGTGACATTTCTAGAGCTTTACAATGAGGAGATAATGGACCTT CTGGACCCTGACGAAAGCCCTACTAGCTCAGATGATAAACCGAAGAAGCCAATAGCCCTGTTGGAAGATGGCAAGGGAGGCGTATTCATAAGAGGCTTGG AGCAGGAGTTGGTTTCTTCTGCAAAGGAAATATACAAGATCTTGGAGAAAGGCTCAGCCAGAAGACAAACCGCTGAAACCCTGCTTAACAAAACCAGCAG CCGTTCCCACACAATTTTCTCTATTACAATTTACATCAAGGAAGACGGTTCTTCAGTTGGCGAGGAGCTAGTGAAGTGTGGAAAACTTAATCTTGTTGAT CTTGCTGGTTCTGAGAATATATCACGTTCTGGAGCGAAAGAGGAACGAGCAAGGGAAGCAGGGGAGATCAATAAAAGCTTGCTAACGCTCGGCCGAGTGA TCAATGCATTAGTTGACCATTCTGGGCATGTTCCTTATAGGGACAGTAAATTGACGAGGTTATTGAGGGATTCACTAGGTGGAAAGACGAAGACTTGTAT AATTGCCACGATATCTCCATCTGTACATTCCTTGGAAGAAACGCTAAATACTCTAGACTATGCTCACCGTGCCAAAAACATAAAAAACAGACCTGAGGCA AGTAGTCAATTACCTTTGTACCTCCCCTGCTCACGTCTGTTCCTTAAGTCAATCCAACTTATAGTTGCAGTGTTCATAAACCAGGTGAACCAGAGGACAA TAAAAGCTGAGCTGCTAAAGGATCTTTATGCTGAGATAGATCGCCTCAGGCAAGAATTACATGCTGCAAGAGAGAAGAGTGGAATTTATGTACCGGTTAA CCGTTACCTGACTGATGAAGCTGAAAGGAAGACACTTGCTGACAAAGTGGAGTTCATGCAACTTGAATTAGATATCAAAGACAAGCAACTTGATAATCAG CAGCTTCAAATAACTGACCTAGGCAGGAAACTTCAGAAGACACAGAACGAACTCCAGGGAACCCACCATAGCTTGTTTGACATGAAGGCTAGACAAAGAA AAGCACTTGCAACAATAAAGGAGAAAGATTACTTGATTTCTAATCTTCTTCAATCTGAGAAAGCACTTACTGATCAAGCTTTGACGCTGCGGGATGAGTT GGAGGGTGCAGCAAAAGAGGCATCAAATTTCTTTGAAAAAATCGAAGCACAGACCAAACTGGGAGAAGCAAACAGACTTCTTATACGCAACTATCAAAGT CAAGTGGCTCAAGAGCTTGAAAGCTTGCACAGAGTTGTTACAAGCGCTGTGACAAAGCAGGAGCAGCAGCTGAAATCAATGGAAAAAGATCTCAGTTTAT TCCTAGCTGATAAAGAAGGGGCTACTGGCGGATTACTGTCACTAGTTGCAAGATCCAAGAACAGCCATGACAGTAGCATCAAGACATTGGAAAATGTAGC TGGCGAGCTTGATGCCGGTTACCAGCTAGCATTTTCTGGTGTAACTTCGGAAGTCACGAGAAACTCTTCTTGTCTTGTTGAGGCAAATAAATATGTGCAG CTTGTGGAAGAGAAGTTCATGCAAATACAGGGCGTTCTTGAAGACATACAGACTGACTTGTCCAACGAGGATGAAAAGCTTGCTGAATATGCACAGCAGC AAAACGAAGCTCACTCCAAGACACTACATATGGCCAAGACAATATCTGAAGCGATTATGAGTTTAACCGGGAAATTAGGCATGCACAGTTCGAATCTGTC TAGAATAGCAGAAGAGACCCAAATAACTACTGGGAAAAAGCTGTATCAACTTGAAAAGGAGTTTGAGTTAAGTGCTGCTTTGGAGAAGGACCTCCTGCTG GAGAAAATTACAGAGCTGTTGGATAGTTCAAATGCTCGGAAGAAAAAGCTGGTTCAAACATCGATTAGCAGCCTTCTGGAGAGCATGGCATCAGGGAACT GCAACTTACAGCTGGAGCTCTCGACCTTGGAAAATGTTGCTTCTTCTGTCAAGGGTGAATGGAGATCTCAAATGGAAATAACAGAGGCTAATCACGTTGA AGCTGTCGGGTCTGTGAAAAAAGGGAAAGTGGATTTGGAAGAACTCCTTCATCAATGCTTAACAAAAGCAAGCACAGGAGCCGTGAACTGCAAAGATGTA TGTGAATCGGTTCTCAGTCAGCAAAAGAGAAGCTTAGATTCTGTTTTCGCCATTGCCAGGGATGGAGTAGAAACCAACCAAGATATCTTCAAAAAGCTCA AATCTTTTTCCATTTCTACACTTCAAGAATCAGACTCTGCAAACCAGTGTCTTGTATCCGCCATTTCGAATCTACTGAATCTGGACCATGAAGTAGAAAA GAAGATGAACATGACCATTGCTCCTTCCATAAATGATATAAAGAAGCTCGACCGTGATCATCTAGACGGAGTACTCGGAATCAAGGAAAATGCAAGGCAA TGCCTAATTAGTGAATACAAGGTCGATGAAACTTGCATCTCAGTCACCAAGGAAAAGTATAGCATACCAAGCAGTTCAGCTATTCTGGAACTCAGAACTC CAGATTTGGAAGTATTAGTAAGCTCCTTCTCTACAAATTCAGCAGCAGAACAAGAACTAGAATCAAAGACACTGCCCGTGGCTCAAAGTTCCGATCAGAA CAATTGTCCTACTCCCGAAGTTCCCCTCGCATCCATCATGTGA
AA sequence Show only first row Show all	>Lus10009073 pacid=23172419 polypeptide=Lus10009073 locus=Lus10009073.g ID=Lus10009073.BGIv1.0 annot-version=v1.0 MDHSHSQQLRRSTMIPVSPPSHTPRTSQRGLRDSVSLDGNSSNSKNDKGVNVQVLLRCRPLNPDEKQLVSPAVISCNEKKGIVTLFQNTAHKQIDKNYQF DKVFGPTCEQKLLFDSAVTPIVNEVLEGYNCTIFAYGQTGTGKTYTMEGGMVAEDGEFPSDAGIIPRAVQQIFEVLEARSEDYSMKVTFLELYNEEIMDL LDPDESPTSSDDKPKKPIALLEDGKGGVFIRGLEQELVSSAKEIYKILEKGSARRQTAETLLNKTSSRSHTIFSITIYIKEDGSSVGEELVKCGKLNLVD LAGSENISRSGAKEERAREAGEINKSLLTLGRVINALVDHSGHVPYRDSKLTRLLRDSLGGKTKTCIIATISPSVHSLEETLNTLDYAHRAKNIKNRPEA SSQLPLYLPCSRLFLKSIQLIVAVFINQVNQRTIKAELLKDLYAEIDRLRQELHAAREKSGIYVPVNRYLTDEAERKTLADKVEFMQLELDIKDKQLDNQ QLQITDLGRKLQKTQNELQGTHHSLFDMKARQRKALATIKEKDYLISNLLQSEKALTDQALTLRDELEGAAKEASNFFEKIEAQTKLGEANRLLIRNYQS QVAQELESLHRVVTSAVTKQEQQLKSMEKDLSLFLADKEGATGGLLSLVARSKNSHDSSIKTLENVAGELDAGYQLAFSGVTSEVTRNSSCLVEANKYVQ LVEEKFMQIQGVLEDIQTDLSNEDEKLAEYAQQQNEAHSKTLHMAKTISEAIMSLTGKLGMHSSNLSRIAEETQITTGKKLYQLEKEFELSAALEKDLLL EKITELLDSSNARKKKLVQTSISSLLESMASGNCNLQLELSTLENVASSVKGEWRSQMEITEANHVEAVGSVKKGKVDLEELLHQCLTKASTGAVNCKDV CESVLSQQKRSLDSVFAIARDGVETNQDIFKKLKSFSISTLQESDSANQCLVSAISNLLNLDHEVEKKMNMTIAPSINDIKKLDRDHLDGVLGIKENARQ CLISEYKVDETCISVTKEKYSIPSSSAILELRTPDLEVLVSSFSTNSAAEQELESKTLPVAQSSDQNNCPTPEVPLASIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45850			P-loop containing nucleoside t...		Lus10009073 [exp]	0	1
AT2G40370		LAC5	laccase 5 (.1)		Lus10007531 [exp]	3.7	0.9422
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10011679 [exp]	6.2	0.9414
AT2G48140		EDA4	embryo sac development arrest ...		Lus10014683 [exp]	6.9	0.9402
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Lus10041142 [exp]	8.2	0.9350
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Lus10040687 [exp]	9.8	0.9237
AT5G37690			SGNH hydrolase-type esterase s...		Lus10039877 [exp]	9.9	0.9165
AT3G18400	NAC	ANAC058	NAC domain containing protein ...		Lus10027227 [exp]	10.2	0.9204
AT5G10280	MYB	ATMYB92, AtMYB6...	myb domain protein 92 (.1)		Lus10036472 [exp]	11.0	0.9289
AT1G68850			Peroxidase superfamily protein...		Lus10013065 [exp]	12.3	0.9197
AT5G37690			SGNH hydrolase-type esterase s...		Lus10018641 [exp]	12.8	0.9092

Compare expression of checked genes

Lus10009073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.