Plant FIBer expression Database

Lus10009075 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025272
[exp]
110 / 5e-31 AT2G37300 69 / 7e-15 ATP-binding cassette I16, unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G082700
[exp]
40 / 0.0003 AT2G37300 71 / 1e-14 ATP-binding cassette I16, unknown protein
PFAM info
Representative CDS sequence
>Lus10009075 pacid=23172404 polypeptide=Lus10009075 locus=Lus10009075.g ID=Lus10009075.BGIv1.0 annot-version=v1.0
ATGGCAGCGAAAGAGAGCAACAAGTTGAGTGGAGATGTAGTTGTTGGTTCGAGTTCTGGGACAGTTGAGTCACTGAGAGGGAGACTTCTTACTGAACGAC
AAATTTCCAGAGTGGCTAATGAAGAAGCTGAGCTGCTAGAAAACAAGCTGAAGGAACTGGAGAGGAAGCTGAAGGAAGAGACTAAACTAAGAGGGAAAGC
TGAAAAGAAGCTGAAATTTCTGATGAGGAAGCTCCATTCTTTGAACATTACCTTCACATTGGATGTGAATTCTTCTTCTTCTTCTTCTTCATCAGATAGC
TCTGGACTGTTGTCTTCCACTGCATCGTCTTCCTTTACTACTTCTACTTCTTCTTCAATTGCCAACAACACAGAAGAAACCAAGTCCCAATTCCAGGACA
AGATCCCTGAGACCGAAACAAGCACAGATTCAGCTCCAATTTTGCAGTATGCCAAGACTGCTGCTGCTGCTGATGATGATGATGATCAAAGGCACTAG
AA sequence
>Lus10009075 pacid=23172404 polypeptide=Lus10009075 locus=Lus10009075.g ID=Lus10009075.BGIv1.0 annot-version=v1.0
MAAKESNKLSGDVVVGSSSGTVESLRGRLLTERQISRVANEEAELLENKLKELERKLKEETKLRGKAEKKLKFLMRKLHSLNITFTLDVNSSSSSSSSDS
SGLLSSTASSSFTTSTSSSIANNTEETKSQFQDKIPETETSTDSAPILQYAKTAAAADDDDDQRH

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G37300 ABCI16 ATP-binding cassette I16, unkn... Lus10009075
[exp]
0 1
AT2G26250 KCS10, FDH FIDDLEHEAD, 3-ketoacyl-CoA syn... Lus10009799
[exp]
2.4 0.9633
AT1G17200 Uncharacterised protein family... Lus10042471
[exp]
2.4 0.9682
AT1G60060 Serine/threonine-protein kinas... Lus10018736
[exp]
3.9 0.9566
AT5G06270 unknown protein Lus10029413
[exp]
5.7 0.9197
AT2G36830 TIP1;1, GAMMA-T... TONOPLAST INTRINSIC PROTEIN 1;... Lus10023913
[exp]
6.6 0.9508
AT3G21690 MATE efflux family protein (.1... Lus10027168
[exp]
6.9 0.9454
AT5G54010 UDP-Glycosyltransferase superf... Lus10013337
[exp]
7.4 0.9470
AT3G09870 SAUR-like auxin-responsive pro... Lus10004014
[exp]
7.7 0.9496
AT5G14950 GMII, ATGMII golgi alpha-mannosidase II (.1... Lus10032179
[exp]
7.9 0.9200
AT1G14960 Polyketide cyclase/dehydrase a... Lus10042489
[exp]
9.7 0.9500

Lus10009075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.