Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08140 86 / 8e-19 ATCHX6a cation/H+ exchanger 6A, cation/H+ exchanger 6A, cation/H+ exchanger 6A (.1) AT3G44930 84 / 3e-18 ATCHX10 cation/H+ exchanger 10, cation/H+ exchanger 10, cation/H+ exchanger 10 (.1) AT3G44910 81 / 2e-17 ATCHX12 cation/H+ exchanger 12, cation/H+ exchanger 12 (.1) AT5G22910 80 / 6e-17 ATCHX9 cation/H+ exchanger 9, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 9, cation/H+ exchanger 9 (.1) AT2G13620 79 / 1e-16 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT2G28170 77 / 4e-16 ATCHX7 CATION/H+ EXCHANGER 7, Cation/hydrogen exchanger family protein (.1) AT3G44900 77 / 4e-16 ATCHX4 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) AT5G22900 74 / 6e-15 ATCHX3 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) AT2G28180 71 / 6e-14 CHX08, ATCHX8 CATION/H+ EXCHANGER 8, Cation/hydrogen exchanger family protein (.1) AT1G08150 71 / 8e-14 ATCHX5 CATION/H+ EXCHANGER 5, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037374 [exp] 254 / 1e-79 AT3G44900 502 / 8e-167 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10041344 [exp] 243 / 4e-75 AT5G22900 511 / 4e-170 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10021412 [exp] 114 / 1e-28 AT5G22900 422 / 5e-136 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Lus10021414 [exp] 107 / 2e-26 AT3G44900 274 / 6e-82 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10016153 [exp] 105 / 1e-25 AT3G44900 434 / 2e-140 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10021413 [exp] 105 / 2e-25 AT2G13620 399 / 7e-127 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10016152 [exp] 95 / 5e-22 AT3G44900 393 / 6e-125 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Lus10035312 [exp] 86 / 1e-18 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10030013 [exp] 85 / 2e-18 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G098300 [exp] 84 / 2e-18 AT5G22900 470 / 3e-154 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.006G176400 [exp] 80 / 6e-17 AT3G44900 442 / 8e-144 cation/H+ exchanger 4, cation/H+ exchanger 4, cation/H+ exchanger 4 (.1) Potri.007G105200 [exp] 76 / 1e-15 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.019G123800 [exp] 76 / 2e-15 AT2G13620 443 / 5e-144 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.016G127800 [exp] 76 / 2e-15 AT5G01680 436 / 6e-142 cation/H+ exchanger 26, ARABIDOPSIS THALIANA CATION/HYDROGEN EXCHANGER 26, cation/H+ exchanger 26 (.1) Potri.013G153200 [exp] 75 / 2e-15 AT2G13620 427 / 2e-137 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.006G176800 [exp] 67 / 2e-12 AT5G22900 371 / 1e-117 cation/H+ exchanger 3, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 3, cation/H+ exchanger 3 (.1) Potri.019G123700 [exp] 67 / 2e-12 AT2G13620 536 / 4e-179 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.003G134900 [exp] 61 / 2e-10 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G189100 [exp] 60 / 3e-10 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF00999 [flax] [poplar] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Lus10009077 pacid=23172405 polypeptide=Lus10009077 locus=Lus10009077.g ID=Lus10009077.BGIv1.0 annot-version=v1.0 ATGATCATAGGAGTCGCGTCTGTGATCGTCCCAAACATCATCAGCCTAATCTACGAATGGAACCCAATCTCTACCTCGGTCCTAGGGGAAAGATTGGTCA TCATGGCATTCCCAGGGGTCCAATCCGTTACAGCATTCCCAGTGGTTTTCCATCTCCTAATCGAGCTAAAGCTCACGAATTCAGAGTTGGGAAGGCTAGC TCTCTCTTGCTCCCTGATTTCATCACTCGTGTCTGCTTGTTTCGAGATTAGCTACGTGATCGTGACACGCAAAAATGGGTTGATAAATACAGGGGTGACA ATCCTATGGAGTTTGGTTTCAGCACTTGTGTTGCATCCAATCATGATGTGGGTAGTTAAGCGCACTCCTCCAGGGTCCAAGTTCCACCCGGCTTGCATGC CCGTCATTCTAGGCGTTGCCTTCATTTACATGATCTTTTTTGATGTTATGACCAAGTGCCAACATTTGGGCGCACTCGTCATTGGCCTGGCTGTTCCGGT CGGTACTTTGTTGGGTACTTATTTGGTTGACAGTCTTGAGAACATAACTAGCTCCTTTATGTTCCCACTCTTTGCGGTAACATCTGTTATGAGGATCGGA GATCTCTCTGTCATGTTTATATCTAAAGTGTTTCCTGACAGAGTTTTTTTACATAACATCCATCTTGGTATCGCTTCTTATCAAGCTTTCCATGTGCTTA TGGTTGTCCCTCACTTGGATGCCTCTGGTTGA
AA sequence Show only first row Show all	>Lus10009077 pacid=23172405 polypeptide=Lus10009077 locus=Lus10009077.g ID=Lus10009077.BGIv1.0 annot-version=v1.0 MIIGVASVIVPNIISLIYEWNPISTSVLGERLVIMAFPGVQSVTAFPVVFHLLIELKLTNSELGRLALSCSLISSLVSACFEISYVIVTRKNGLINTGVT ILWSLVSALVLHPIMMWVVKRTPPGSKFHPACMPVILGVAFIYMIFFDVMTKCQHLGALVIGLAVPVGTLLGTYLVDSLENITSSFMFPLFAVTSVMRIG DLSVMFISKVFPDRVFLHNIHLGIASYQAFHVLMVVPHLDASG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08140		ATCHX6a	cation/H+ exchanger 6A, cation...		Lus10009077 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10032930 [exp]	6.0	0.7913
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025412 [exp]	6.5	0.7973
AT3G50470		MLA10, HR3	INTRACELLULAR MILDEW A 10, hom...		Lus10000836 [exp]	6.9	0.7151
AT5G58960		GIL1	GRAVITROPIC IN THE LIGHT, Plan...		Lus10016444 [exp]	16.2	0.7831
AT2G36780			UDP-Glycosyltransferase superf...		Lus10014402 [exp]	16.6	0.7684
					Lus10041943 [exp]	23.2	0.7689
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Lus10028791 [exp]	23.5	0.7662
AT3G55050			Protein phosphatase 2C family ...		Lus10015047 [exp]	25.7	0.7418
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10021924 [exp]	25.9	0.7487
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Lus10014401 [exp]	29.0	0.7497

Compare expression of checked genes

Lus10009077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.