Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19100 436 / 2e-147 Protein kinase superfamily protein (.1) AT1G49580 434 / 6e-147 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G50530 409 / 6e-137 CRK CDPK-related kinase (.1.2) AT2G41140 386 / 2e-128 CRK1, ATCRK1, ATCBK3 CDPK-related kinase 1 (.1) AT3G56760 379 / 6e-126 Protein kinase superfamily protein (.1) AT2G46700 347 / 4e-113 ATCRK3 CDPK-related kinase 3 (.1.2) AT5G24430 327 / 1e-105 Calcium-dependent protein kinase (CDPK) family protein (.1) AT3G49370 318 / 5e-102 Calcium-dependent protein kinase (CDPK) family protein (.1) AT2G17890 251 / 1e-76 CPK16 calcium-dependent protein kinase 16 (.1) AT5G66210 243 / 7e-75 CPK28 calcium-dependent protein kinase 28 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025270 [exp] 607 / 0 AT3G50530 825 / 0.0 CDPK-related kinase (.1.2) Lus10002966 [exp] 402 / 1e-133 AT3G50530 1006 / 0.0 CDPK-related kinase (.1.2) Lus10023234 [exp] 342 / 3e-111 AT5G24430 742 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10008875 [exp] 342 / 7e-111 AT5G24430 800 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Lus10009342 [exp] 244 / 1e-74 AT3G50530 695 / 0.0 CDPK-related kinase (.1.2) Lus10041914 [exp] 241 / 2e-72 AT2G17890 875 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10028459 [exp] 238 / 2e-72 AT2G17890 858 / 0.0 calcium-dependent protein kinase 16 (.1) Lus10036667 [exp] 221 / 1e-65 AT1G18890 804 / 0.0 calcium-dependent protein kinase 1 (.1) Lus10023346 [exp] 218 / 9e-65 AT5G12180 780 / 0.0 calcium-dependent protein kinase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G143700 [exp] 464 / 1e-158 AT3G50530 843 / 0.0 CDPK-related kinase (.1.2) Potri.009G105700 [exp] 417 / 1e-140 AT3G50530 801 / 0.0 CDPK-related kinase (.1.2) Potri.005G135900 [exp] 416 / 8e-140 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.007G040800 [exp] 399 / 3e-133 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.016G035500 [exp] 398 / 3e-133 AT2G41140 965 / 0.0 CDPK-related kinase 1 (.1) Potri.006G040500 [exp] 394 / 5e-132 AT2G41140 866 / 0.0 CDPK-related kinase 1 (.1) Potri.002G176700 [exp] 363 / 3e-119 AT2G46700 835 / 0.0 CDPK-related kinase 3 (.1.2) Potri.014G103500 [exp] 348 / 3e-113 AT2G46700 840 / 0.0 CDPK-related kinase 3 (.1.2) Potri.012G023300 [exp] 337 / 4e-109 AT5G24430 811 / 0.0 Calcium-dependent protein kinase (CDPK) family protein (.1) Potri.007G057600 [exp] 238 / 8e-72 AT5G66210 869 / 0.0 calcium-dependent protein kinase 28 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009078 pacid=23172409 polypeptide=Lus10009078 locus=Lus10009078.g ID=Lus10009078.BGIv1.0 annot-version=v1.0 ATGGGTGCCTGCACTTCGAAGCCGCCTCCGAAGTCCAATCCCTACGCACCAAGAAACCAGCAGCCTCCCACCGAGCTCCAAACACCTGACCACCAACATT CCGACGATCAGCAACCGCCGCTTCCGAATTCGACTCCCTTCTTCCCGCTCGACACTCCCAGCCCTTCACGCGCCGAAACGCCTACGCCGATGCGGATCTT CAAGTTCCATCCTCCTTCTCCGGCCAAGCACATTCGCGCCGTGCTCCGTAAACGGAAGAGCGAAAAGAGTAAGAAGAAGGCGGCGAAGGCGGAGGGAGAC GTGACTGCAGAGGAGGAAGAAGAAGGAGAAGGCGTTGCCTTGGACAGGAGATTTGGATTCTCCAAGGAGTTGACGAGTAAGCTTGAGGTCGGTGAAGAAG TAGGGCGGGGGCATTTTGGGTATACTTGTTCGGCTAGGTTTAGGAAAGGCGATCGGAAAGGGCAGCAAGTCGCCGTTAAAGTCATCCCTAAATCTAAGAT GACAACGTCAATTGCAGTAGAGGATGTGAGAAGGGAGGTGAAGATACTCAAGGCCTTGGCTGGACATGGCAATTTAGTGCAGTTTTATGATGCATTTGAA GACTCTGACAATGTCTACATAGTCATGGAATTATGCACAGGAGGCGAGCTCCTGGATAGAATACTTTCAAGAGGTGGGAAATACCCAGAAGATGATGCTA AGGCAGTGATGGTGCAGATACTTAGTGTTGTAGCTTTCTGTCATCTGCAAGGTGTGGTGCACCGCGACCTTAAACCAGAGAACTTTCTCTATACTTCAAA GGAAGAGAACTCTCATCTGAAAGTGATAGACTTTGGCTTGTCAGATTATGTCAGACCAGATGAAAGGCTCAATGACATTGTAGGAAGCGCGTACTATGTT GCACCAGAGGTTCTACACAGGTCATATAGCACTGAGGCCGACGTATGGAGTATAGGCCTTGTTGCATTGGTGAAGACACTGTCTGTAGATGAGATATTTT ATCTGAAGGAGCAATTCGCAATATTGCAGCCAAATAAAAATGGTAGCGTTACACTGGAGAACATTAGGATGGCCTTGATGAAAAACGCGACAGAGGCAAT GAGAGATTCTCGCATCCCTGATATTCTAGCTTCGGTATCTGTTCCGAACAGCACATTTGCCATTATCATTGACCTAAATACACTTCAACACAAAAAGATG GAATTTGAAGAATTTTGCGCTGCTGCAGTAAGTGTTCACCAATTGGAGGCACTTGACGGATGGGAACAACATGCACGTTCTGCATATGAAATTTTCGACA AGGATGGAAACAGGGCTATCATCATTCAGGAACTTGCCTCGGAGCTCGGGCTTGGTCCATCCATCCCGGTTCATGCCGTTCTAAATGACTGGATAAGACA TAGTGATGGTAAACTAAGCTTCCATGGGTTCGTCAAACTGTTGCATGGTATCCCGGGATACACAACTCGTAGAGCCATCGAAGTCTGGGACGAGAAGGCA ACTAACATGACCAAAGCTGATTGTCATAATCATCCAACATAG
AA sequence Show only first row Show all	>Lus10009078 pacid=23172409 polypeptide=Lus10009078 locus=Lus10009078.g ID=Lus10009078.BGIv1.0 annot-version=v1.0 MGACTSKPPPKSNPYAPRNQQPPTELQTPDHQHSDDQQPPLPNSTPFFPLDTPSPSRAETPTPMRIFKFHPPSPAKHIRAVLRKRKSEKSKKKAAKAEGD VTAEEEEEGEGVALDRRFGFSKELTSKLEVGEEVGRGHFGYTCSARFRKGDRKGQQVAVKVIPKSKMTTSIAVEDVRREVKILKALAGHGNLVQFYDAFE DSDNVYIVMELCTGGELLDRILSRGGKYPEDDAKAVMVQILSVVAFCHLQGVVHRDLKPENFLYTSKEENSHLKVIDFGLSDYVRPDERLNDIVGSAYYV APEVLHRSYSTEADVWSIGLVALVKTLSVDEIFYLKEQFAILQPNKNGSVTLENIRMALMKNATEAMRDSRIPDILASVSVPNSTFAIIIDLNTLQHKKM EFEEFCAAAVSVHQLEALDGWEQHARSAYEIFDKDGNRAIIIQELASELGLGPSIPVHAVLNDWIRHSDGKLSFHGFVKLLHGIPGYTTRRAIEVWDEKA TNMTKADCHNHPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G46700		ATCRK3	CDPK-related kinase 3 (.1.2)		Lus10009078 [exp]	0	1
AT3G11540		SPY	SPINDLY, Tetratricopeptide rep...		Lus10017009 [exp]	2.0	0.8841
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	10.6	0.8571
AT5G59830			unknown protein		Lus10024426 [exp]	12.1	0.8239
AT1G14700		PAP3, ATPAP3	purple acid phosphatase 3 (.1....		Lus10035100 [exp]	15.0	0.8172
AT4G35780		STY17	serine/threonine/tyrosine kina...		Lus10041845 [exp]	22.4	0.8820
AT2G46290			Transducin/WD40 repeat-like su...		Lus10010332 [exp]	23.8	0.8119
AT5G13560			unknown protein		Lus10023462 [exp]	25.9	0.8133
AT3G50620			P-loop containing nucleoside t...		Lus10002971 [exp]	31.3	0.8194
AT1G04130		TPR2, AtTPR2	tetratricopeptide repeat 2, Te...		Lus10014250 [exp]	32.6	0.8450
AT1G75520		SRS5	SHI-related sequence 5 (.1)		Lus10003416 [exp]	48.5	0.8357

Compare expression of checked genes

Lus10009078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.