Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51830 800 / 0 ATG5, SAC8 SAC domain-containing protein 8 (.1.2) AT3G51460 493 / 4e-169 rhd4 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) AT5G66020 490 / 8e-168 IBS2, ATSAC1B, ATSAC6, SACIB IMPAIRED IN BABA-INDUCED STERILITY 2, SAC DOMAIN-CONTAINING PROTEIN 6, SUPPRESSOR OF ACTIN 1B, Phosphoinositide phosphatase family protein (.1) AT1G17340 144 / 4e-36 Phosphoinositide phosphatase family protein (.1) AT3G14205 140 / 6e-35 Phosphoinositide phosphatase family protein (.1) AT5G20840 137 / 7e-34 Phosphoinositide phosphatase family protein (.1) AT1G22620 110 / 5e-25 ATSAC1 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) AT3G43220 108 / 1e-24 Phosphoinositide phosphatase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025267 [exp] 931 / 0 AT3G51830 731 / 0.0 SAC domain-containing protein 8 (.1.2) Lus10016697 [exp] 491 / 4e-168 AT3G51460 947 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10035993 [exp] 491 / 4e-168 AT3G51460 929 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Lus10027650 [exp] 140 / 9e-35 AT3G43220 936 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10039913 [exp] 139 / 2e-34 AT3G43220 842 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Lus10037446 [exp] 103 / 6e-23 AT3G14205 947 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10013184 [exp] 103 / 9e-23 AT3G14205 923 / 0.0 Phosphoinositide phosphatase family protein (.1) Lus10014827 [exp] 102 / 2e-22 AT1G22620 1389 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G118300 [exp] 870 / 0 AT3G51830 882 / 0.0 SAC domain-containing protein 8 (.1.2) Potri.005G100500 [exp] 496 / 2e-170 AT3G51460 976 / 0.0 ROOT HAIR DEFECTIVE4, Phosphoinositide phosphatase family protein (.1) Potri.006G136400 [exp] 143 / 8e-36 AT3G43220 1018 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.018G063700 [exp] 142 / 2e-35 AT3G43220 1043 / 0.0 Phosphoinositide phosphatase family protein (.1.2) Potri.003G071300 [exp] 136 / 2e-33 AT3G14205 1011 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.001G163900 [exp] 120 / 2e-28 AT3G14205 987 / 0.0 Phosphoinositide phosphatase family protein (.1) Potri.013G107950 [exp] 99 / 3e-21 AT1G22620 1355 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1) Potri.019G080300 [exp] 97 / 9e-21 AT1G22620 1397 / 0.0 suppressor of actin 1, Phosphoinositide phosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF02383 [flax] [poplar] Syja_N SacI homology domain
Representative CDS sequence Show only first row Show all	>Lus10009080 pacid=23172394 polypeptide=Lus10009080 locus=Lus10009080.g ID=Lus10009080.BGIv1.0 annot-version=v1.0 ATGGAAGCTGATTCTTCCCCTTCGCCTCCGTCTTCGCCGTCGGCGGTGGTCGCCGGTAATAGATTCAGGCTACATGACCGCCTGGAGCTGCTGGAGTTTC AGGACAAGTACGTCATCAAGTCGGTCGAATCGCCTAATCGAGGCTTCTCCATCAGTCGTGAAGACGGCGGCATCCAGCCTCTCAACGATGATACTTCTCT TGAACGGCCATCCGCGACCTCCACAATCTATGGAGTCGCTGGAACGATTCGATTGATTGCAGGAACTTATATTCTTGTAATAACTTCTCAAAAGGAAGTC GGGAAGTTCCTCGGGTCTCCAGTGTTCCGAGTAATGTCTATGCAATTTCTGCCCTGCAACGAGGCTTTGAAGTTTTCCACTCCTGACGAAAAGAGGGATG AGGCTTGCTTTAGGAATCTGTTGAGGACTGTTGAATCAACTCCTGCCTTGTATTACTCATATGAAACAGACATAACATTGAACTTACAGAGAAGATGCAA ACTAGCTGAAGGGTGGATGGCTAAACCACTTTGGAAGCAGGCTGACCCTCGATTTGTTTGGAATCAAAATCTGCTGGAAGATCTCATTGAGGCTAAGTAT GAGTTCCATATTGTTGAGATAACTCGGAAGTATTATTGTCTAGGGACAAGAATGTGGAGGAGAGGTGCTAACCTTCAAGGAAATACTGCTAACTCGGTTG AATCTGAGCAATTGCTAGAGGTCGGAGGTTTCAGGTCATCATTATTGCAGTTCCGAGGTTCAATTCCTCTTCTTTGGGAGCAAACAGTGGACTTGAGCTA TAAACCTCGTCTCAAAATTATCGAAAATGATCAAACGCCAAGAGTTGTGGAGCGCCATTTCCATGATCTTGGCCAACGATATGGAGATGTTTTAGCACTC GATTTGACTAATAACCATGGTGATGAAGGTCTTCTTAGTGCAGCATATGCTAATGAAATGCAAAGGCTCCCAAATGTGAGGTATTGCTCATTCGATTTCC ACCATGTCTGTGGCAACTCAAATTTTGACAACCTACTGGTTCTCTATGATCAAATTTCAGAAGATTTCCAAAAGCAAGGATATTTTCAAGTAGACAGCGA GGGGAAAATAGTAGAGGAACAGAAAGGGATCATTAGATCAAACTGCATTGACTGCCTTGATAGGACAAACGTCACCCAGAGTTTTCTTGCTGAAAAGTCG TTGACAATACAATTACAAAGAATCGGAATACTTGGTCCTGATGAGAGCGTGGCCACTTCAAGTGAGGAGTATGTAAAGTTCAGAACATTGTGGGCTGAGC AAGGAGATGAGATAAGCCTTGGATATGCTGGAACTCACGCCTTGAAAGGGGACCTTGTAAGATACGGGAAGCAGACTTTTGGTGGGATGATCAAAGATGG GATGAGCGCTCTCTCGAGATACTACTTGAATAACTTCCAAGATGGAGATGCACTGGATCTTATAAGTGGGCGGTATAGCGTGAATAGACAAGCCCCGTCC CCGTTCCAGCTCAACATGTTCGAATCTTTCTCTTATCTCCCAGTAGCATCAGTCTTGCTCATCGGAGGAGGGTTGACGGTTACATCCTTCACGCTTCATC AAGCGGGGAGAAATGCGCAGCAATATTTGTCGTCGGTGCTGTGGGCTGGAGTGACGGCTGGAGTAATGGCGGTTGTTAAAGCGAATGGGAGACAGTTCTG TTCCAGGCCTCGCTTATGTGGGCTCCGTTGA
AA sequence Show only first row Show all	>Lus10009080 pacid=23172394 polypeptide=Lus10009080 locus=Lus10009080.g ID=Lus10009080.BGIv1.0 annot-version=v1.0 MEADSSPSPPSSPSAVVAGNRFRLHDRLELLEFQDKYVIKSVESPNRGFSISREDGGIQPLNDDTSLERPSATSTIYGVAGTIRLIAGTYILVITSQKEV GKFLGSPVFRVMSMQFLPCNEALKFSTPDEKRDEACFRNLLRTVESTPALYYSYETDITLNLQRRCKLAEGWMAKPLWKQADPRFVWNQNLLEDLIEAKY EFHIVEITRKYYCLGTRMWRRGANLQGNTANSVESEQLLEVGGFRSSLLQFRGSIPLLWEQTVDLSYKPRLKIIENDQTPRVVERHFHDLGQRYGDVLAL DLTNNHGDEGLLSAAYANEMQRLPNVRYCSFDFHHVCGNSNFDNLLVLYDQISEDFQKQGYFQVDSEGKIVEEQKGIIRSNCIDCLDRTNVTQSFLAEKS LTIQLQRIGILGPDESVATSSEEYVKFRTLWAEQGDEISLGYAGTHALKGDLVRYGKQTFGGMIKDGMSALSRYYLNNFQDGDALDLISGRYSVNRQAPS PFQLNMFESFSYLPVASVLLIGGGLTVTSFTLHQAGRNAQQYLSSVLWAGVTAGVMAVVKANGRQFCSRPRLCGLR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51830		ATG5, SAC8	SAC domain-containing protein ...		Lus10009080 [exp]	0	1
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10018680 [exp]	2.0	0.9254
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10028613 [exp]	2.4	0.9250
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Lus10018913 [exp]	7.9	0.9124
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	9.2	0.9035
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	9.5	0.9318
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	10.6	0.9250
AT5G58720			smr (Small MutS Related) domai...		Lus10018236 [exp]	11.4	0.8705
AT5G15020		SNL2	SIN3-like 2 (.1.2)		Lus10014505 [exp]	12.7	0.9041
AT1G04300			TRAF-like superfamily protein ...		Lus10022208 [exp]	15.0	0.9007
AT4G18270		ATTRANS11	ARABIDOPSIS THALIANA TRANSLOCA...		Lus10023316 [exp]	26.2	0.9040

Compare expression of checked genes

Lus10009080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.