Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05570 283 / 1e-79 transducin family protein / WD-40 repeat family protein (.1.2) AT2G38410 158 / 6e-40 ENTH/VHS/GAT family protein (.1) AT5G01760 131 / 2e-31 ENTH/VHS/GAT family protein (.1) AT1G76970 91 / 9e-19 Target of Myb protein 1 (.1) AT1G21380 91 / 1e-18 Target of Myb protein 1 (.1) AT3G08790 91 / 2e-18 ENTH/VHS/GAT family protein (.1) AT4G35560 89 / 2e-17 DAW1 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G32760 85 / 1e-16 ENTH/VHS/GAT family protein (.1.2) AT5G63640 63 / 8e-10 ENTH/VHS/GAT family protein (.1) AT1G06210 56 / 1e-07 ENTH/VHS/GAT family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030399 [exp] 298 / 3e-84 AT5G05570 977 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10037841 [exp] 293 / 6e-83 AT5G05570 1009 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10022753 [exp] 210 / 3e-57 AT5G01760 434 / 3e-144 ENTH/VHS/GAT family protein (.1) Lus10014155 [exp] 206 / 9e-56 AT5G01760 439 / 5e-146 ENTH/VHS/GAT family protein (.1) Lus10025264 [exp] 345 / 3e-23 AT2G38410 406 / 1e-132 ENTH/VHS/GAT family protein (.1) Lus10001254 [exp] 89 / 4e-20 AT5G05570 85 / 9e-20 transducin family protein / WD-40 repeat family protein (.1.2) Lus10022140 [exp] 93 / 5e-19 AT4G32760 637 / 0.0 ENTH/VHS/GAT family protein (.1.2) Lus10002478 [exp] 83 / 1e-18 AT5G05570 73 / 3e-16 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011689 [exp] 91 / 3e-18 AT3G08790 461 / 5e-154 ENTH/VHS/GAT family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G117800 [exp] 468 / 2e-146 AT5G05570 900 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G187700 [exp] 303 / 5e-86 AT5G05570 1069 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.008G069700 [exp] 262 / 1e-74 AT5G05570 624 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.016G131900 [exp] 186 / 7e-49 AT2G38410 406 / 2e-132 ENTH/VHS/GAT family protein (.1) Potri.006G106500 [exp] 179 / 9e-47 AT2G38410 407 / 2e-133 ENTH/VHS/GAT family protein (.1) Potri.016G117700 [exp] 91 / 1e-21 AT5G05570 90 / 3e-22 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G101600 [exp] 90 / 4e-21 AT5G05570 72 / 8e-16 transducin family protein / WD-40 repeat family protein (.1.2) Potri.006G241000 [exp] 96 / 7e-20 AT4G32760 630 / 0.0 ENTH/VHS/GAT family protein (.1.2) Potri.005G101600 [exp] 95 / 2e-19 AT4G35560 1037 / 0.0 DUO1-activated WD40 1, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.018G039100 [exp] 92 / 7e-19 AT4G32760 561 / 0.0 ENTH/VHS/GAT family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03127 [flax] [poplar] GAT GAT domain CL0009 [flax] [poplar] ENTH_VHS PF00790 [flax] [poplar] VHS VHS domain
Representative CDS sequence Show only first row Show all	>Lus10009082 pacid=23172424 polypeptide=Lus10009082 locus=Lus10009082.g ID=Lus10009082.BGIv1.0 annot-version=v1.0 ATGGCTTGGCAATTTTGTTTCAGCGATGGACGAATTAAAGTAATCCGAGGTGATGATGCTGAGGGCTTGCTTGTATCTCCCAAGCAATTGCCTTACAAAT TCTTGGAGTTCATACCGAATGATGGTTTCTTGATCGGCATCACAACCGAGGATGACATTCAGATCCTAACTCTCGAATGGTCGTTTAAGGCAGATACGTT GAGATGTGATGGTCGTCTGGACCTTACACTTACTGGCACTTTTGCTGATATGATTGTGCTACCAAGGGCTGGTTCAACCAGGGATAAACACACAGCTGCT CTCACTGTATTAACAAATCCAGGCCAACTGCATCGGTTCGATGGAGCTTGCTTATATTCCCTTCTGGCTCGACAAGAGAGGAAAACAATGGTTATTTCAT TGGAATGCCCTGTGATAGTACCTACTCTCGGTCCACCCATGACGACAACGAAATTCGTTACATTGCCTATGCATGAAAACTCGTTAAAGCTTTCGTGTGA GGTGGTTTCAGCTAAGAAACAACACAGCTCCAAGCCAGAGGCTGCCAGTCCAAAACCGATCACTACCGAAACCCCTCATGTTGAGAGAATGTACATAGCA GGATATCAAGATGGATCTGTTCGCGTGTGGAACGCCACGTCACCTGTCCTATCACTTATTTTCCTTATAGAAGGGAAGATGCAAGGAGTAGAACCTCTTG GTTTTGGTGCTCCAGTATCAACATTAGATTTATGCTGCCATACTTTGCTCTTGGCTGTCGGCACTGAACAAGGACTGATTCGCATTTACAACTTGTGCGG GAACTCGAATGAACCCAGCTTTTGGCTTGTAACGGAAAATGCACGTGAAATTAAAACTTCACCTCAAGGGAAAGGTCCCAAGTGTAAAGCGGTTTTTGCA CTCCTGCATTCCCCCATTGAATCTTTACAGTTCTCAAGTTTTGGAGCTAAACTTGCTGTGGGTTTCGCATGTGGCCGAACATCAGTTCTCGATATGAGTT CATTTTCCGTTCTGTTCTTGACTGCTCCTGCATCAAGCTCTGGCTCTCCATTAATCTCTGTGAATTGGGTAGATTTTTCAAGTACAAACAACCCTGTAAA GAGCTCAAAGACTTCAGAATCTCCTGCTAAGATTCATCCCACGGAGGAAGTCATGCTCGTTTTGACCAAAGATGCTGGAATCAGTGCTGTTGATGCTGGT AGTGGTAAAATGATCAGGACTCATTCTTGGCACCCAAAAACGAAATCCACTGCAATTTCCATGTGTATCGTAGAAATTCTGAAACTTGTGGCTACAGAAG GACACTCAGGCTCAAACAATGGACAGCCGCAGCATGAGTCTAATGAGAATGATGCTTCCACAACTACTCCTGCGGTGGTTAGTTCAGACGACATAAACCA ACAATCCCTTAACAATCCGACTCCTGTATCAGAAAGATCCAAAGAGTCCCTTATTTTGCTTTCCTGCGAAAAAGCATTGCGTCTATACTCTACAAAGAGT GTGATTCAGGGAAACAAAAAAGTCATCTGCAAAGTGAAGTATTCAGACCCTTGTGTTTGGACTGCAATCTTCAAGAAAGATGGAGAAGTCATTGGGGTCG TCTCGCTGTTTACAACTGGCGATATCAAACCAGGGATCTTAACTCGTCTTGCCAAAAGCTTTAAAGGCTGCAAACCTGACTGCAGCACGGAGGATGCTTC TCAGGTGTCCTATGATACCACAAATATTCCCAATCTAGAGGATGTTTTCGCAAAACCACCCCCATTGCCAGACTCGTCTCATAAATCACATCCGGAAATG GACTCTTCTATTGGACATGAGAAGGAAGAGGAGCTTAATATAGATGATATCGAGATAGACGAACCTCCTATGCCACCACCCGTGACAACTTTCTCAAAAC AGCCTAACAAAGTCAGGAGAGGTATCATTATCATTTCTAGTGACAGGTTTTATCAACTATATTTCGAACTTTTACATTTGTGTGCCCCTGACGAGTATTT TCATGGAACAGAAAGGGAAGAGTTGTTAGGCACAAGTGATGATGTGAAGCCTAGAATCAGAACACCCCAAGAAATCATAGCTACATATAGAAAAGCTGGG GATGCTTCTTCTGCTGCTTTGCAAACGAGGGACAAGCTCTTGGAGAGGGGGGAGAAACTAGAGAGAATAAGCAGGAGAACAGCTGAGCTGCGGAACGAGG CAGAGGACTTTGCGTCATTAGCAAATGAGCTTGTCAAGGTGATGGAGAAACGGAAATGGCAAGCGAAAGATGTGGTCAAAGCTGTGAAGAAAAGGCTGCA GCACAGGAACGCTGGCGTTCAGCTACTTGCTCTAACGCTATTGGAGACGATGGTGATGAACTGTGGTGATTTCGTCCATTTCCAAATTGTCGAGAAGAAT ATACTGGCGAAATGTTTGTCAAGCCTGGAATCCATGCGCAATGTTATGGACCTCTTGAGGGATATGTTGCAAGCTGTTGGCCCTGATGACCATGAGGCTG TAAAAGACGAGGTGATAGTTGATCTCGTTGAAAGTTGTCGATCCAACCAGAAAAAGTTGATGCAAATGCTGACTACCACTGGGGATGAGGAAGTTCTTGT TCAGGGCCTCGACTTAAATGACAGCTTGCAGATCCTGCTGGCAAAACATGATACCATAGCTTCCGGTTCAGCCATGCCTTCACTGGCTTCACAATTCAGG TCTGAAGAAAGAGATGGTTCTTCGCCAAACACAAAACCTAACAAAGTAAACGAACAGACTCCAGGGCCCAGGACGGAACCAAACACAACGGTATCTAACG TAACAAATGATCATGTGGATGAAGATGATGAAGAAGAAGAGGATGACTTCGCACAACTAGCTCGCAGGCACTCCAAAAGTCAGCCTAGTTATACTGAAGC CATAAATGGAGCAACATCTGGAGTACTCGTACCTGTAGAGTCCCATCAAACATCCTCAGAAGCTGCATCGTCGTCGCCCGCTTTAGAGATTGGAAATCCA TATACTTCAGCTATGAGTAGACAAGAGCAAGATCTGATTGATCTCTTAAGTATTACCTTGTCAACAAACGAATCCAGCATTTCTCAGAATACACAAATCC AGTTTCCTCCGGCACAGAAGTTTATCCTGGTAGTCAGGGCCCGACAACCTATAGTAGTTATGTCCCTCCATGGGCTCAATCTCAACAGCAGCAGCACTCA GCAGTCACTGCAGATTCGGTCACGGTCTCAATCTCAGCCACAACTGCACCAACAGCATCCACAGTATTTGCAGCAGCCACAGATTCCAGCGTCGTCTCAA TCTCAGCCACAGCAACAACAACAGCATCCTCAATACTGA
AA sequence Show only first row Show all	>Lus10009082 pacid=23172424 polypeptide=Lus10009082 locus=Lus10009082.g ID=Lus10009082.BGIv1.0 annot-version=v1.0 MAWQFCFSDGRIKVIRGDDAEGLLVSPKQLPYKFLEFIPNDGFLIGITTEDDIQILTLEWSFKADTLRCDGRLDLTLTGTFADMIVLPRAGSTRDKHTAA LTVLTNPGQLHRFDGACLYSLLARQERKTMVISLECPVIVPTLGPPMTTTKFVTLPMHENSLKLSCEVVSAKKQHSSKPEAASPKPITTETPHVERMYIA GYQDGSVRVWNATSPVLSLIFLIEGKMQGVEPLGFGAPVSTLDLCCHTLLLAVGTEQGLIRIYNLCGNSNEPSFWLVTENAREIKTSPQGKGPKCKAVFA LLHSPIESLQFSSFGAKLAVGFACGRTSVLDMSSFSVLFLTAPASSSGSPLISVNWVDFSSTNNPVKSSKTSESPAKIHPTEEVMLVLTKDAGISAVDAG SGKMIRTHSWHPKTKSTAISMCIVEILKLVATEGHSGSNNGQPQHESNENDASTTTPAVVSSDDINQQSLNNPTPVSERSKESLILLSCEKALRLYSTKS VIQGNKKVICKVKYSDPCVWTAIFKKDGEVIGVVSLFTTGDIKPGILTRLAKSFKGCKPDCSTEDASQVSYDTTNIPNLEDVFAKPPPLPDSSHKSHPEM DSSIGHEKEEELNIDDIEIDEPPMPPPVTTFSKQPNKVRRGIIIISSDRFYQLYFELLHLCAPDEYFHGTEREELLGTSDDVKPRIRTPQEIIATYRKAG DASSAALQTRDKLLERGEKLERISRRTAELRNEAEDFASLANELVKVMEKRKWQAKDVVKAVKKRLQHRNAGVQLLALTLLETMVMNCGDFVHFQIVEKN ILAKCLSSLESMRNVMDLLRDMLQAVGPDDHEAVKDEVIVDLVESCRSNQKKLMQMLTTTGDEEVLVQGLDLNDSLQILLAKHDTIASGSAMPSLASQFR SEERDGSSPNTKPNKVNEQTPGPRTEPNTTVSNVTNDHVDEDDEEEEDDFAQLARRHSKSQPSYTEAINGATSGVLVPVESHQTSSEAASSSPALEIGNP YTSAMSRQEQDLIDLLSITLSTNESSISQNTQIQFPPAQKFILVVRARQPIVVMSLHGLNLNSSSTQQSLQIRSRSQSQPQLHQQHPQYLQQPQIPASSQ SQPQQQQQHPQY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05570			transducin family protein / WD...		Lus10009082 [exp]	0	1
AT3G26020			Protein phosphatase 2A regulat...		Lus10036926 [exp]	2.0	0.8885
AT1G23230			unknown protein		Lus10035997 [exp]	9.6	0.8522
AT5G25270			Ubiquitin-like superfamily pro...		Lus10040001 [exp]	11.4	0.8724
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	11.5	0.8415
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Lus10012850 [exp]	22.9	0.8579
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Lus10000925 [exp]	23.0	0.8317
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	24.5	0.8404
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030611 [exp]	30.4	0.8421
AT4G13980	HSF	AT-HSFA5	HEAT SHOCK TRANSCRIPTION FACTO...		Lus10022546 [exp]	31.7	0.8334
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Lus10033491 [exp]	32.7	0.8468

Compare expression of checked genes

Lus10009082 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.