Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G08850 1947 / 0 ATRAPTOR1B, RAPTOR1B HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G01770 1796 / 0 RAPTOR2, ATRAPTOR1A, RAPTOR1A RAPTOR2, HEAT repeat ;WD domain, G-beta repeat protein protein (.1) AT5G08390 55 / 3e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 54 / 1e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 47 / 0.0002 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G52250 44 / 0.0006 EFO1, RUP1 REPRESSOR OF UV-B PHOTOMORPHOGENESIS 1, EARLY FLOWERING BY OVEREXPRESSION 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025263 [exp] 2522 / 0 AT3G08850 2054 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10014156 [exp] 1561 / 0 AT3G08850 1330 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10022752 [exp] 664 / 0 AT3G08850 630 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10014157 [exp] 144 / 6e-39 AT3G08850 160 / 9e-46 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Lus10041007 [exp] 56 / 3e-07 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10013452 [exp] 56 / 4e-07 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10018458 [exp] 48 / 6e-05 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10011224 [exp] 48 / 7e-05 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106600 [exp] 2161 / 0 AT3G08850 1968 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.016G132000 [exp] 2143 / 0 AT3G08850 1862 / 0.0 HEAT repeat ;WD domain, G-beta repeat protein protein (.1) Potri.008G002300 [exp] 53 / 1e-06 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 52 / 3e-06 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 51 / 6e-06 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10009083 pacid=23172400 polypeptide=Lus10009083 locus=Lus10009083.g ID=Lus10009083.BGIv1.0 annot-version=v1.0 ATGGCATTGGGCGATTTGATGGCGTCTCGGTTCTCGCAGACTTCTCTGGCCGTCGTATCCAATCATTACGATGACTTCGCATCTACTCATGGCGATGACG ATGCAGTGGATTTAGCTTCACAGAGGAGGGATTCGGAGGGACCTAGTAGTAGTAATAGCTATGCTAATGCTGGGGCTAGCGCCACTACAAGCATGGCCTA TTTGCCTCAGACTGTCTTCTTGTGTGAACTTCGCCATGAGGCATTTGAAGTTCCTGTTCCTACTGGTCCATCTGACAGTGGTATTGTGTCTAAATGGCGA CCTAAAGATCGAATGAAGACAGGATATGTAGCTCTAGTTTTATGTTTAAATATCAGTATCGATCCACCGGATGTAATAAAGATTTCACCTTGTGCCCGAA TGGAGTGCTGGATAGATCCATTTTCAATGCAACCTTCAAAAGCTCTTGAATCAATTGGTAAGACTTTGAGTCTTCAGTATGAAAGATGGCAACCAAGGGC ACGGTATAAGGTGCAACTTGATCCTACCGTGGAAGAGGTGAAAAAACTTTGCAATACATGTCGCCGATATGCTAAATCAGAGAGGGTTTTGTTTCATTAT AATGGACATGGTGTCCCAAAACCAACTCCTAATGGTGAAATTTGGCTTTTCAACAAGAGCTATACACAGTACATACCGTTGCCGATCAATGATCTTGATT CCTGGTTAAAAACACCATCCATCTACGTCTTTGACTGTTCTGCTGCTGGAATCATTGTGAATGCCTTCATTGAGGTATATTCTGATCATGCTTGTGAAGC ACATGAGACGCTACCTCAAAGTCCTGAATTTCCTGCTGATGTGTTTACTTCTTGCTTGACTACCCCCATTAAGATGGCATTGAGATGGTTTTGCACACGT TCATTACTTCGTGACACCCTTGATTATTCATTAATTGACAAGATTCCTGGTCGTCAAAATGACCGCAAAACTCTGCTTGGGGAGTTGAACTGGATCTTTA CCGCAGTGACTGATACTATTGCTTGGAATGTTCTTCCTCACGATCTTTTTCAAAGACTGTTTAGACAAGATTTGTTGGTCGCCAGTCTATTTCGGAATTT TTTGCTTGCTGAGAGAATCATGCGCTCAGCAAACTGTTCTCCAATTTCTCACCCAATGTTGCCACCTACACATCAACACCATATGTGGGATGCATGGGAT ATGGCTGCTGAAATTTGTCTTTCTCAACTTCCATCGTTGATTGACGACCCTAATGCGGAGTTCCAGCCCAGTCCCTTTTTCACTGAACAACTGATGGCCT TTGAGGTATGGTTAGATCATGGCTCAAAAGATAAAAAACCTCCAGAGCAGTTACCTATTGTGCTTCAGGTTCTACTTAGTCAGTGCCACCGATTTAAAGC TTTGGTTCTTCTTGGAAGGTTCCTGGACATGGGTCCCTGGGCAGTGGATCTGGCATTGTCTGTTGGAATATTCCCTTATGTATTGAAGTTGCTTCAAACA ACGACACCCGAACTTAGGCATATCCTTGTGTTTATATGGACGAAAATACTAGCTCTTGATAAGTCATGCCAGGTTGATCTTGTCAAGGATGGTGGACATA CATATTTCATACGGTTTCTTGATAGCCTGGAAGCATATCCTGAACAGCGTGCCATGGCTGCATTTGTTTTGGCTGTCATTGTCGATGGACATAGGCGGGG CCAGGAAGCTTGTATTGAAGCTGGTTTAATCCATGTATGCTTGAAGCATCTGCAAGGTTCAACCCCAAACGATGGACCGTCTGAGCCATTGTTTCTTCAG TGGGTTTCTCTGTGTCTAGGGAAGCTCTGGGAAGATTTTACAGATGCTCAGATCATGGGTTTGCAGGCAGATGCCCCTGGGATTTATGCTCCATTACTGT CTGAGCCCCAGCCCGAGGTTCGAGCATCTGCTGTTTTTGCTTTGGGAACCCTGCTAGACATTGGCGGTGATGCTTGCCAAGATAGTGTTGGAGGAGATGA TGATTATGACGATGATGAAAAACTTAGAGCTGAGAATAGTATAGTTAAAAGCATATTAAGTGTTTTTTCTGATGGAAGCCCACTGGTCAGGGCAGAGGTT GCTGTTGCATTGGGGCGCTTTGCATTTGGCCACAAGCAGCACCTCAAATCCATTGCTACTGCGTATTGGAAGCCTCAGTCTAACTCAGTACTGAATTCAT TACCTTCTTTGGCTCACATAAAAGCAACTGGCAGTGGATACACTAACGCAAACCAGTATATGCCTCATGCAAGTATCATTGCAGCCCAAATTGGTCCATT GACACGAGTTGGCAGTGACACTAAATCAGTGGTGCGCGAGGGAAGAGTTTCTGCCAGTAGTCCACTTGCTGGTACAGGAATCATGCACGGGTCACCATTA TCTGATGATTCTTCTCATCATTCTGATTCTGGTATCCTTAATGATGTCGTAAGCAATGGAGGGGTGAATCATTTGAGGCCAAGAGCTCTGGATAATGCTA TCTATTCACAATGTGTGCTGGCCATGCTAACTTTGGCGAAGGATCCTTCGCCGCGGATAGCAAACTTTGGGTGCAGAGTACTTTCAATCATTGGGATTGA GCAAGTTGTAGCAAAACCTTTGAATTCCTCTGGCAGCAATCATTGCCCTGTTGAAACTACAAGCTCGTCCCCAGCTCCAAGTTTTGTTGCGGGGTTGGCG CGATCATCCTCCTGGCTTGACATGAATGCAGGTCAGCTGCCGTTGACATTCAGAACTCCACCAGTTAGTCCTCCCCGAACTAGTTATTTAACAGGAATGC GTAGAGTTTGTTCTTTGGAGTTCAGACCTCACTTGATGAGTTCCCCAGATTCTGGGTTAGCCGACCCTCTTCTGGGTTCGGGTGGAGTTTCTGGAGGTTC AGAACGCAGTCTTCTTCCTCAATCAACAATCTACAACTGGAGTTCGAGTCATTTCTCCAAGCCGCTTCTTACTGCCACTGATGATAGTGAAGACATGCTG ATACGACGAGAAGAGAGGGAAAAGTTTGCCCTGGAGCACATTGCAAAGTGCCAGCACTCTTCTGTTAGTAAGCTTAATAATCAAATAGCTGGATGGGATA CAAAGTTTGAAGCTGGCACCAAAGCAGCACTGCTTCATCCTTTTTCTCCTATTGTAGTTGCTGCAGATGATAATGAACGGATTAGAGTGTGGAACTACGA GGAAGCTTCGCTTCTAAATGGGTTTGACAACCATGATTGTCCTGACAAAGGAATTTCCAAGCTATGCCTTGTGAATGAGCTAGATGACAGCATGCTTCTT GTTGCTTCAGGTGACGGTAACATCCGGATTTGGAAAGATTATACTGTAAAGGGGAAACAAAAACTTGTTACTGCATTTTCTTCTCTCCAAGGTCATAAAG CTGGTGTGCGTACTTTGAATGCCGTTGTGGATTGGCAACAACAATCTGGATATCTGTATTACCTTGATTACTATGATTACTATGATTTAGACTGCTCTGA AATGCTTCCAATGCCTTTGCATGAACAGTATGCTTCCGGTGAGGTATCCTCCGTGATGCTATGGGACTTGGAGAAAGAACAGCTTGTCAATTCTATTTCA TCATCATCAGATTGTAGTTGCTCATCACTGTCGGCTTCTCAAGTTCATGGAGGTCAATTCGCAGCGGGTTTTCTTGATGGTTCAGTAAGATTGTATGATA TTCGCACACCTGAAACGCCTGTTTGCACGATGCGACCTCACACCCAAAAGGTAGAAAGAGTAGTTGGTATTGGGTTTCAGCCCGGATTTGATCCTGCCAA GATTGTCAGTGCTTCCCAGGCTGGCGATATTCAGTTCCTGGACATCAGAAATCAAAGAGATGCCTATCTCACTATTAATGCCCACAGGGGCTCACTTACG TCGTTAGCTGTTCATAGGCATGCTCCCATAATTGCCAGTGGCTCAGCGAAGCAAATTATCAAAGTATTTAGTCTTGAGGGTGCTCAACTCGGAACCATTC GTTACTACTCCACCTTCATGGCGCAGAAGATCGGTTCCGTTGGTTGCCTTACGTTCCATCCTTATCAACTTCTCCTTGCTTCCGGAGCTGCCGATGCTTA TGTATCTATCTGGGCTGATGATAACACTCAAGCAAGGTGA
AA sequence Show only first row Show all	>Lus10009083 pacid=23172400 polypeptide=Lus10009083 locus=Lus10009083.g ID=Lus10009083.BGIv1.0 annot-version=v1.0 MALGDLMASRFSQTSLAVVSNHYDDFASTHGDDDAVDLASQRRDSEGPSSSNSYANAGASATTSMAYLPQTVFLCELRHEAFEVPVPTGPSDSGIVSKWR PKDRMKTGYVALVLCLNISIDPPDVIKISPCARMECWIDPFSMQPSKALESIGKTLSLQYERWQPRARYKVQLDPTVEEVKKLCNTCRRYAKSERVLFHY NGHGVPKPTPNGEIWLFNKSYTQYIPLPINDLDSWLKTPSIYVFDCSAAGIIVNAFIEVYSDHACEAHETLPQSPEFPADVFTSCLTTPIKMALRWFCTR SLLRDTLDYSLIDKIPGRQNDRKTLLGELNWIFTAVTDTIAWNVLPHDLFQRLFRQDLLVASLFRNFLLAERIMRSANCSPISHPMLPPTHQHHMWDAWD MAAEICLSQLPSLIDDPNAEFQPSPFFTEQLMAFEVWLDHGSKDKKPPEQLPIVLQVLLSQCHRFKALVLLGRFLDMGPWAVDLALSVGIFPYVLKLLQT TTPELRHILVFIWTKILALDKSCQVDLVKDGGHTYFIRFLDSLEAYPEQRAMAAFVLAVIVDGHRRGQEACIEAGLIHVCLKHLQGSTPNDGPSEPLFLQ WVSLCLGKLWEDFTDAQIMGLQADAPGIYAPLLSEPQPEVRASAVFALGTLLDIGGDACQDSVGGDDDYDDDEKLRAENSIVKSILSVFSDGSPLVRAEV AVALGRFAFGHKQHLKSIATAYWKPQSNSVLNSLPSLAHIKATGSGYTNANQYMPHASIIAAQIGPLTRVGSDTKSVVREGRVSASSPLAGTGIMHGSPL SDDSSHHSDSGILNDVVSNGGVNHLRPRALDNAIYSQCVLAMLTLAKDPSPRIANFGCRVLSIIGIEQVVAKPLNSSGSNHCPVETTSSSPAPSFVAGLA RSSSWLDMNAGQLPLTFRTPPVSPPRTSYLTGMRRVCSLEFRPHLMSSPDSGLADPLLGSGGVSGGSERSLLPQSTIYNWSSSHFSKPLLTATDDSEDML IRREEREKFALEHIAKCQHSSVSKLNNQIAGWDTKFEAGTKAALLHPFSPIVVAADDNERIRVWNYEEASLLNGFDNHDCPDKGISKLCLVNELDDSMLL VASGDGNIRIWKDYTVKGKQKLVTAFSSLQGHKAGVRTLNAVVDWQQQSGYLYYLDYYDYYDLDCSEMLPMPLHEQYASGEVSSVMLWDLEKEQLVNSIS SSSDCSCSSLSASQVHGGQFAAGFLDGSVRLYDIRTPETPVCTMRPHTQKVERVVGIGFQPGFDPAKIVSASQAGDIQFLDIRNQRDAYLTINAHRGSLT SLAVHRHAPIIASGSAKQIIKVFSLEGAQLGTIRYYSTFMAQKIGSVGCLTFHPYQLLLASGAADAYVSIWADDNTQAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10009083 [exp]	0	1
AT4G16310		LDL3	LSD1-like 3 (.1)		Lus10024311 [exp]	1.7	0.9601
AT3G11960			Cleavage and polyadenylation s...		Lus10013542 [exp]	3.5	0.9399
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	4.0	0.9295
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10023583 [exp]	4.5	0.9226
AT1G58230			binding (.1)		Lus10042866 [exp]	4.9	0.9277
AT1G73960		TAF2	TBP-associated factor 2 (.1.2)		Lus10016716 [exp]	5.0	0.9292
AT4G00800		SETH5	transducin family protein / WD...		Lus10030199 [exp]	5.1	0.9171
AT2G31900		ATMYO5, PCR11, ...	MYOSIN XI F, MYOSIN 5, myosin-...		Lus10008461 [exp]	6.5	0.8919
AT1G02080			transcription regulators (.1.2...		Lus10028176 [exp]	6.6	0.9415
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10019875 [exp]	6.6	0.9050

Compare expression of checked genes

Lus10009083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.