Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46230 215 / 2e-72 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT5G59720 209 / 3e-70 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT1G53540 204 / 2e-68 HSP20-like chaperones superfamily protein (.1) AT2G29500 190 / 1e-62 HSP20-like chaperones superfamily protein (.1) AT1G07400 185 / 6e-61 HSP20-like chaperones superfamily protein (.1) AT1G59860 172 / 2e-55 HSP20-like chaperones superfamily protein (.1) AT4G10250 103 / 3e-28 ATHSP22.0 HSP20-like chaperones superfamily protein (.1) AT5G37670 89 / 3e-23 HSP15.7CI HSP20-like chaperones superfamily protein (.1) AT5G12020 71 / 4e-16 HSP17.6II 17.6 kDa class II heat shock protein (.1) AT5G12030 71 / 5e-16 AT-HSP17.6A heat shock protein 17.6A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040723 [exp] 187 / 1e-61 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 183 / 4e-60 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 182 / 2e-59 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 181 / 7e-59 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10040830 [exp] 179 / 2e-58 AT1G53540 236 / 6e-81 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 173 / 6e-56 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1) Lus10026262 [exp] 115 / 1e-32 AT4G10250 152 / 5e-47 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 111 / 3e-31 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10040560 [exp] 103 / 4e-28 AT4G10250 200 / 1e-65 HSP20-like chaperones superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G238700 [exp] 216 / 3e-73 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1) Potri.009G039200 [exp] 202 / 2e-67 AT1G07400 201 / 3e-67 HSP20-like chaperones superfamily protein (.1) Potri.008G062300 [exp] 195 / 8e-65 AT5G59720 198 / 9e-66 heat shock protein 18.2 (.1) Potri.008G062350 [exp] 195 / 9e-65 AT5G59720 196 / 3e-65 heat shock protein 18.2 (.1) Potri.010G195700 [exp] 193 / 7e-64 AT5G59720 190 / 1e-62 heat shock protein 18.2 (.1) Potri.019G081250 [exp] 190 / 8e-63 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.019G081200 [exp] 187 / 9e-62 AT2G29500 186 / 3e-61 HSP20-like chaperones superfamily protein (.1) Potri.009G147900 [exp] 183 / 6e-60 AT2G29500 193 / 5e-64 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 181 / 4e-59 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 179 / 1e-58 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [flax] [poplar] HSP20 PF00011 [flax] [poplar] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Lus10009085 pacid=23172429 polypeptide=Lus10009085 locus=Lus10009085.g ID=Lus10009085.BGIv1.0 annot-version=v1.0 ATGTCTCTGATTCCGAGCTTCTTAGGCAACCGCAGGAGCAACGTCTTCGATCCATTCTCCCTCGAGATTTGGGACCCCTTCGAAGGCCTTTTCACTCCCG GCGGATCGCTCTCCACCGTCCCTAACCAATCATCCGCGGCGGGGGCGTTCGTGAACGCGAGGATCGACTGGAAGGAGACGCCGGAGGCTCACGTGTTCAA AGCCGATGTGCCGGGGCTGAAGAAGGAAGAGGTGAAGGTGGAGGTGGAAGAAGGGAGGATACTGCAGATCAGCGGGGAGAGGAGTAAAGAGCAGGAAGAG AAGAAGGACACGTGGCACCGAGTGGAGCGGAGCAGCGGCAAGTTCGTGAGGAGGTTCCGGCTGCCGGAGAATGCCAAGGTGGAGCGGGTGAAGGCGGCGA TGGAGAACGGGGTGCTGACTGTTACGGTTCCCAAGGAGGAAGAGAAGAAGAAGGCTCAAGTGAAGAGTGTTGAGATCTCTGGCTGA
AA sequence Show only first row Show all	>Lus10009085 pacid=23172429 polypeptide=Lus10009085 locus=Lus10009085.g ID=Lus10009085.BGIv1.0 annot-version=v1.0 MSLIPSFLGNRRSNVFDPFSLEIWDPFEGLFTPGGSLSTVPNQSSAAGAFVNARIDWKETPEAHVFKADVPGLKKEEVKVEVEEGRILQISGERSKEQEE KKDTWHRVERSSGKFVRRFRLPENAKVERVKAAMENGVLTVTVPKEEEKKKAQVKSVEISG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53540			HSP20-like chaperones superfam...		Lus10009085 [exp]	0	1
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026099 [exp]	1.4	0.9839
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Lus10002319 [exp]	2.0	0.9834
AT2G20560			DNAJ heat shock family protein...		Lus10015402 [exp]	2.4	0.9833
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	3.5	0.9732
AT2G20560			DNAJ heat shock family protein...		Lus10013981 [exp]	3.9	0.9718
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027517 [exp]	6.5	0.9674
AT2G46240		ATBAG6, BAG6	ARABIDOPSIS THALIANA BCL-2-ASS...		Lus10012648 [exp]	7.9	0.9633
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10027518 [exp]	8.1	0.9687
AT5G52640		AtHsp90-1, ATHS...	HEAT SHOCK PROTEIN 83, HEAT SH...		Lus10039281 [exp]	8.5	0.9646
AT5G07330			unknown protein		Lus10042036 [exp]	8.7	0.9292

Compare expression of checked genes

Lus10009085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.