Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38400 625 / 0 AGT3 alanine:glyoxylate aminotransferase 3 (.1.2) AT3G08860 621 / 0 PYD4 PYRIMIDINE 4 (.1) AT4G39660 520 / 0 AGT2 alanine:glyoxylate aminotransferase 2 (.1) AT1G80600 169 / 2e-47 WIN1 HOPW1-1-interacting 1 (.1) AT3G22200 134 / 4e-34 HER1, GABA-T, POP2 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) AT5G46180 127 / 3e-32 DELTA-OAT ornithine-delta-aminotransferase (.1) AT3G48730 84 / 3e-17 GSA2 glutamate-1-semialdehyde 2,1-aminomutase 2 (.1) AT5G63570 79 / 1e-15 GSA1 "glutamate-1-semialdehyde-2,1-aminomutase", glutamate-1-semialdehyde-2,1-aminomutase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025262 [exp] 856 / 0 AT3G08860 722 / 0.0 PYRIMIDINE 4 (.1) Lus10004480 [exp] 535 / 0 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10029922 [exp] 523 / 0 AT4G39660 801 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Lus10008025 [exp] 160 / 1e-43 AT1G80600 614 / 0.0 HOPW1-1-interacting 1 (.1) Lus10031196 [exp] 154 / 9e-42 AT1G80600 606 / 0.0 HOPW1-1-interacting 1 (.1) Lus10003810 [exp] 132 / 2e-33 AT3G22200 758 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10010465 [exp] 132 / 2e-33 AT3G22200 756 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Lus10023299 [exp] 122 / 4e-30 AT5G46180 743 / 0.0 ornithine-delta-aminotransferase (.1) Lus10038510 [exp] 122 / 5e-30 AT5G46180 741 / 0.0 ornithine-delta-aminotransferase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G106800 [exp] 650 / 0 AT3G08860 771 / 0.0 PYRIMIDINE 4 (.1) Potri.016G132200 [exp] 642 / 0 AT2G38400 769 / 0.0 alanine:glyoxylate aminotransferase 3 (.1.2) Potri.007G085600 [exp] 528 / 0 AT4G39660 814 / 0.0 alanine:glyoxylate aminotransferase 2 (.1) Potri.007G080000 [exp] 213 / 9e-68 AT4G39660 278 / 5e-93 alanine:glyoxylate aminotransferase 2 (.1) Potri.005G082100 [exp] 186 / 2e-56 AT4G39660 219 / 1e-69 alanine:glyoxylate aminotransferase 2 (.1) Potri.017G053500 [exp] 164 / 9e-46 AT1G80600 677 / 0.0 HOPW1-1-interacting 1 (.1) Potri.005G095800 [exp] 159 / 1e-43 AT1G80600 636 / 0.0 HOPW1-1-interacting 1 (.1) Potri.006G020900 [exp] 137 / 2e-35 AT3G22200 834 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.016G018500 [exp] 135 / 7e-35 AT3G22200 826 / 0.0 POLLEN-PISTIL INCOMPATIBILITY 2, HEXENAL RESPONSE1, GAMMA-AMINOBUTYRATE TRANSAMINASE, Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1), Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.2) Potri.011G082800 [exp] 132 / 5e-34 AT5G46180 734 / 0.0 ornithine-delta-aminotransferase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00202 [flax] [poplar] Aminotran_3 Aminotransferase class-III
Representative CDS sequence Show only first row Show all	>Lus10009086 pacid=23172413 polypeptide=Lus10009086 locus=Lus10009086.g ID=Lus10009086.BGIv1.0 annot-version=v1.0 ATGCAGAGGTTGGCCGCGAGGAGTGGATTACTAAGAGAAGGAAGAAGGATAAAAGGATCCAACTCGCTTTTCCGGTCGCAATCATCACACGCTGCTGCTC AGAGGAAGAAAGAAGAAGAGAATTATGACGCTCTCCCGAAAATGCCTTCCTTCGATTACTCTCCGGCACCATACACCGGTCCTCCCGCCGACGAGATTTT ATCAAAACGTCGCCAGTTCCTCAACCCTTCCATTTTCTATCTGTATCAGAACCCCGTGAAGCGCATCCAGCATCCAACCACGCTCTATCTCAACCATGCT GTAGCTGATTTCGCTGAGGCTTTGGCCTCCAAGATGCCTGGCAATCTTAAGGTGGCGTTCTTCACGAATTCTGGAACAGAAGCCAACGAGCTGGCCATGA TGATGGCGAGGATGTACACGGGGTCTCACGATATGATATCGGTGAGGAATTCTTACCATGGAAATGCTGCTGCGACGATGAATGCTACCGGCCAACGAAA CTGGAAGTTCAATTCCATGCAGAGCGGGATTCACCATGTGCTGAACCCGGATCCGTACAGAGGTGTATTTGGCTCTGATGGAGAGAAGTATGCGAAAGAC GTCCAGGATACCCTTGATTTTGCAACCACCGGCCAGGTTGCTGGATTCATCTCTGAAGCTATACAGGGAGTTGGTGGAATCATTGAACCAGCACCTGGTT ATCTCCCAGCTGCGTATAAAAGCGTTAGGGAATCTGGAGGTGTTTGTATTGCAGACGAAGTTCAGTGTGGCGTTGCTCGCACTGGATATATGTGGGGATT TGAAGCACATGGTGTTGTTCCTGATATCGTCACAATGGCAAAGGGACTTGGTAATGGCATGCCTCTTGGTGCTGTAGTCACTACCCCTGAGATCGCTGAG GTGTTAACTCGCCGCAGTTACTTCAACACATTTGGTGGGAATCCAGTTAGTACAGCTGCAGGGCTGGCCGTTTTGAGAGTGATAGAGAAAGATAATCTCC GGGAAAATGCTTCAGTCGTGGGGGGCTACCTGAAAGATAGACTGACTGCTCTCAAAGACAAATACGAAATTATTGGTGATGTAAGGGGAAGAGGGATGAT GCTTGGAGTCGAACTCGTTAGCGACCGCGAGAAGAAAACTCCTGCAAATGTTGAAATTGTGCATATACTGAACCAGATGAAAGAAATGGGAGTCTTGGTG GGCAAGGGAGGGTTCTATGGAAACGTTTTCAGAATCTTACCACCTCTCTGCTTCACTAAAGCAGATGCAGATTACCTTGTCGATGTTATGGATTACTCCA TGTCGAAGATGTGA
AA sequence Show only first row Show all	>Lus10009086 pacid=23172413 polypeptide=Lus10009086 locus=Lus10009086.g ID=Lus10009086.BGIv1.0 annot-version=v1.0 MQRLAARSGLLREGRRIKGSNSLFRSQSSHAAAQRKKEEENYDALPKMPSFDYSPAPYTGPPADEILSKRRQFLNPSIFYLYQNPVKRIQHPTTLYLNHA VADFAEALASKMPGNLKVAFFTNSGTEANELAMMMARMYTGSHDMISVRNSYHGNAAATMNATGQRNWKFNSMQSGIHHVLNPDPYRGVFGSDGEKYAKD VQDTLDFATTGQVAGFISEAIQGVGGIIEPAPGYLPAAYKSVRESGGVCIADEVQCGVARTGYMWGFEAHGVVPDIVTMAKGLGNGMPLGAVVTTPEIAE VLTRRSYFNTFGGNPVSTAAGLAVLRVIEKDNLRENASVVGGYLKDRLTALKDKYEIIGDVRGRGMMLGVELVSDREKKTPANVEIVHILNQMKEMGVLV GKGGFYGNVFRILPPLCFTKADADYLVDVMDYSMSKM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G08860		PYD4	PYRIMIDINE 4 (.1)		Lus10009086 [exp]	0	1
AT5G14280	GeBP		DNA-binding storekeeper protei...		Lus10036981 [exp]	2.4	0.8738
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Lus10028797 [exp]	3.6	0.8950
AT3G52360			unknown protein		Lus10016198 [exp]	4.7	0.8149
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10033105 [exp]	6.2	0.8383
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	6.6	0.8799
AT5G18980			ARM repeat superfamily protein...		Lus10001111 [exp]	7.2	0.8634
AT5G05960			Bifunctional inhibitor/lipid-t...		Lus10000397 [exp]	7.4	0.8408
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	8.7	0.8604
AT5G40450			unknown protein		Lus10001136 [exp]	9.3	0.7885
AT1G75810			unknown protein		Lus10033134 [exp]	9.9	0.8437

Compare expression of checked genes

Lus10009086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.