Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01780 176 / 8e-55 2-oxoglutarate-dependent dioxygenase family protein (.1.2) AT3G14160 176 / 2e-54 2-oxoglutarate-dependent dioxygenase family protein (.1) AT3G14140 132 / 3e-37 2-oxoglutarate-dependent dioxygenase family protein (.1) AT1G11780 51 / 3e-08 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025260 [exp] 250 / 1e-83 AT3G14160 308 / 8e-102 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10033471 [exp] 159 / 4e-48 AT3G14160 305 / 2e-100 2-oxoglutarate-dependent dioxygenase family protein (.1) Lus10037023 [exp] 52 / 2e-08 AT1G11780 472 / 3e-168 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1) Lus10015782 [exp] 50 / 6e-08 AT1G11780 473 / 8e-169 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132300 [exp] 190 / 7e-60 AT5G01780 307 / 1e-101 2-oxoglutarate-dependent dioxygenase family protein (.1.2) Potri.003G070100 [exp] 186 / 1e-57 AT3G14160 348 / 2e-115 2-oxoglutarate-dependent dioxygenase family protein (.1) Potri.003G171900 [exp] 54 / 3e-09 AT1G11780 468 / 3e-166 oxidoreductase, 2OG-Fe(II) oxygenase family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009087 pacid=23172430 polypeptide=Lus10009087 locus=Lus10009087.g ID=Lus10009087.BGIv1.0 annot-version=v1.0 ATGGAAGCAATTGAGGATGCTCATGAACTTGTCAGAAAGAATTGCGGCGAGACCACCATGGAAGACATTCTTCCTGCAATGATTCCGAACATATGCATCA CGAACTTCTACACAGCTAGCGGGAGACTTGGACTTCATCAGGATCGAGACGAAAGTAGGGAGAGCCTCAAAAGAGGACTTCCGGTAGTCCCTTTCTCCAT CGGGGATTCTGCGGAGTTCCTGTACGGAGATCAGAGGGATAAGGACATGACGGAGAGGGTTACGCTGGAATCAGGAGATGTGGTGATATTGGGAGGGAAG TCTAGACATGTTTTTCATGGTGTTGAATCCATCATCCCACATTCAGCTCCCAGGTCCCTGGTCGAAGAAACAGGGCTTTGCGAAGGACGTCTCAATCTCA CTTCCAGACAAGACTGA
AA sequence Show only first row Show all	>Lus10009087 pacid=23172430 polypeptide=Lus10009087 locus=Lus10009087.g ID=Lus10009087.BGIv1.0 annot-version=v1.0 MEAIEDAHELVRKNCGETTMEDILPAMIPNICITNFYTASGRLGLHQDRDESRESLKRGLPVVPFSIGDSAEFLYGDQRDKDMTERVTLESGDVVILGGK SRHVFHGVESIIPHSAPRSLVEETGLCEGRLNLTSRQD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01780			2-oxoglutarate-dependent dioxy...		Lus10009087 [exp]	0	1
					Lus10006919 [exp]	1.4	0.9831
AT5G65230	MYB	ATMYB53	myb domain protein 53 (.1)		Lus10039735 [exp]	7.1	0.8909
AT4G29820		CFIM-25, ATCFIM...	ARABIDOPSIS THALIANA HOMOLOG O...		Lus10011944 [exp]	7.2	0.9555
					Lus10011962 [exp]	9.0	0.9188
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Lus10012601 [exp]	10.4	0.9188
					Lus10022805 [exp]	11.6	0.9188
AT5G05530			RING/U-box superfamily protein...		Lus10024629 [exp]	12.7	0.9188
AT2G15220			Plant basic secretory protein ...		Lus10026579 [exp]	13.7	0.9188
AT2G36620		RPL24A	ribosomal protein L24 (.1)		Lus10014637 [exp]	14.7	0.9188
AT5G04350			Plant self-incompatibility pro...		Lus10029388 [exp]	15.6	0.9188

Compare expression of checked genes

Lus10009087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.