Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51710 343 / 5e-113 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78850 64 / 1e-10 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78860 62 / 3e-10 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78830 59 / 5e-09 Curculin-like (mannose-binding) lectin family protein (.1) AT5G03700 59 / 6e-09 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT1G78820 58 / 8e-09 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) AT4G03230 57 / 3e-08 S-locus lectin protein kinase family protein (.1) AT1G16905 56 / 3e-08 Curculin-like (mannose-binding) lectin family protein (.1) AT4G32300 56 / 5e-08 SD2-5 S-domain-2 5 (.1) AT5G35370 50 / 4e-06 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025259 [exp] 197 / 2e-60 AT3G51710 119 / 1e-37 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10025258 [exp] 115 / 4e-30 AT3G51710 82 / 4e-19 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10039315 [exp] 68 / 1e-11 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10022495 [exp] 66 / 2e-11 AT1G78860 363 / 1e-122 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10043391 [exp] 64 / 1e-10 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10000579 [exp] 62 / 7e-10 AT1G78850 387 / 7e-132 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Lus10002917 [exp] 61 / 2e-09 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 57 / 2e-08 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10034194 [exp] 53 / 2e-07 AT4G32300 224 / 4e-67 S-domain-2 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132500 [exp] 437 / 5e-150 AT3G51710 464 / 2e-161 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.011G110300 [exp] 81 / 5e-16 AT1G78860 404 / 1e-138 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G391300 [exp] 77 / 9e-15 AT1G78850 391 / 2e-133 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.001G006100 [exp] 69 / 3e-12 AT2G41890 389 / 1e-123 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.008G016900 [exp] 68 / 6e-12 AT5G03700 479 / 2e-166 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.016G102600 [exp] 67 / 1e-11 AT1G34300 367 / 1e-114 lectin protein kinase family protein (.1) Potri.016G053800 [exp] 67 / 2e-11 AT2G41890 768 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1) Potri.011G110000 [exp] 66 / 2e-11 AT1G78850 424 / 1e-146 D-mannose binding lectin protein with Apple-like carbohydrate-binding domain (.1) Potri.016G102900 [exp] 66 / 5e-11 AT1G34300 359 / 2e-111 lectin protein kinase family protein (.1) Potri.006G053700 [exp] 65 / 6e-11 AT2G41890 765 / 0.0 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10009088 pacid=23172401 polypeptide=Lus10009088 locus=Lus10009088.g ID=Lus10009088.BGIv1.0 annot-version=v1.0 ATGTCGACGTGTAGACGCCATGTCAGCAGAGATCATAATTCAACAGCGACAGGTCTGGGCCTCCTGTTCCATCAAATTCAAAAGAGAGATGAGATGGAAA TGGATCATAAACAAAACAATGTCCCTGCCCCCGACTACAGCCCTGGATTCATTGGCAGAGTTTTCCTCATGGAGACTCAACAGCCCGAGCCCAACTTCAA AGTCGCGATAAGCGTCGAGTCCTTGGTTCAAGGTCGATTTTCTTGCTCCCTGGAGGTGTTCCTAGGAGATGTCAAGGTCTGGAACTCCGGACATTACTCC CCGTTCTTCACCACGGACCAATGCGTGATTAAGCTCGCTCAAGACGGTGAATTGCAGCTCAAGGGTGAAAATGGCAGACGACTCGGGTGGCGCTCTGGCA CTTCTGCACAGGGTGTGGAGAAGCTAGTGATTATGGAGACGGGGAATCTGGTTCTAGTGGACGCAATCGGCAGAGTCAAATGGCAGAGCTTCAACTTCCC GACGGATGTAATCCTGTGGGGGCACAGGCTGAACATCGCCACCCGATTGGCTTCTTTTCCCTCAACCGCCACGGTCGCCACCGCATCCAATTCAACCGCA TTCTACTACACGTTCGAAATTCACCGGAACAGGATAGCTCTACACTTAATTTCAGGAAAATTGAACTATTCCTATTGGGAATTCAAGCCTACGAAGAACC GAAATATCAACTTCATCAAGCTGGCTTCAAAGGCACTAGAGCTCTACGACGACGAAAACCAAAAAATCGCCCAAATACAGTCGGACCGGATTGAACCTCT CCGGTTTCTATCGCTATCGAATCGAACCCGAAACTTGGGACTCTATTTCTACTCACTGGAGGAAAGGAAGTTCTCGACAGCATTCCAATCAATGACCACG ACTTGCGATCTTCCTTCGGCTTGTAAGCCTTACGGCATTTGCACATCCTCCTCCTCCTCCTGCTCCTGCATCCGGCTCTCCAACAAGGATTTAGGCTGCG AAGTGGAGGCAAGTTTAGGGTTAGGGTTTTGCGGCGGAGGGGAGAAGGAGGAGGAAGTGGATATGGTAGAATTGAGTGACGTCAATACCGTGATGAGGGA AGCAGACAGTAAGGCGAACGTCAGGAAGGAAGATTGCGCCAAATCTTGCTTGGAAGATTGTAATTGTGTGGCGGCACTGTATGATACTTCTGATTCTACC GCCACCGGCGGGGGCGGGAGTAGCATCGGGGAGTGTTATATTTATGGGGTGGTGATGGGGTTGAAACAGGCGGAGGCGGTGGAGAAAGGAATGTTGACTT ATATGATCAATGTTGACTTAGTTGAGTTGCGATCCAAACCTTCCCGCAGGCTCCTTCTCAGAACCAGAGGCAACTTACACGATTCGACACCTGTTTCAAT CCAGGTTCGAGCCTTTAGGATAAAACTCTTTCCAAATTGTGATCGACTAACCAGCGAACCAAACCTGAGTAATGAAGGCCAAGTGACCCGAGAGCATTCG ACCCGAGAGCATTCGATTAAGGTTGTAAATGAGCTCGGGCTTGTTAAGGCTCGATAA
AA sequence Show only first row Show all	>Lus10009088 pacid=23172401 polypeptide=Lus10009088 locus=Lus10009088.g ID=Lus10009088.BGIv1.0 annot-version=v1.0 MSTCRRHVSRDHNSTATGLGLLFHQIQKRDEMEMDHKQNNVPAPDYSPGFIGRVFLMETQQPEPNFKVAISVESLVQGRFSCSLEVFLGDVKVWNSGHYS PFFTTDQCVIKLAQDGELQLKGENGRRLGWRSGTSAQGVEKLVIMETGNLVLVDAIGRVKWQSFNFPTDVILWGHRLNIATRLASFPSTATVATASNSTA FYYTFEIHRNRIALHLISGKLNYSYWEFKPTKNRNINFIKLASKALELYDDENQKIAQIQSDRIEPLRFLSLSNRTRNLGLYFYSLEERKFSTAFQSMTT TCDLPSACKPYGICTSSSSSCSCIRLSNKDLGCEVEASLGLGFCGGGEKEEEVDMVELSDVNTVMREADSKANVRKEDCAKSCLEDCNCVAALYDTSDST ATGGGGSSIGECYIYGVVMGLKQAEAVEKGMLTYMINVDLVELRSKPSRRLLLRTRGNLHDSTPVSIQVRAFRIKLFPNCDRLTSEPNLSNEGQVTREHS TREHSIKVVNELGLVKAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51710			D-mannose binding lectin prote...		Lus10009088 [exp]	0	1
					Lus10013622 [exp]	1.0	0.8263
					Lus10022051 [exp]	6.6	0.7455
AT5G17820			Peroxidase superfamily protein...		Lus10020311 [exp]	7.7	0.7481
AT1G18010			Major facilitator superfamily ...		Lus10043370 [exp]	7.9	0.7994
AT1G49170			Protein of unknown function (D...		Lus10042819 [exp]	11.3	0.7934
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10031176 [exp]	12.1	0.7956
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10031029 [exp]	17.9	0.7887
AT4G05400			copper ion binding (.1.2)		Lus10031070 [exp]	20.3	0.7277
AT2G34930			disease resistance family prot...		Lus10029483 [exp]	25.5	0.7355
AT2G17140			Pentatricopeptide repeat (PPR)...		Lus10013832 [exp]	25.9	0.7516

Compare expression of checked genes

Lus10009088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.