Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G40435 122 / 9e-36 unknown protein AT3G56220 115 / 1e-32 bHLH transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025257 [exp] 243 / 1e-82 AT2G40435 134 / 2e-40 unknown protein Lus10010217 [exp] 132 / 4e-39 AT2G40435 152 / 1e-47 unknown protein Lus10017415 [exp] 131 / 5e-39 AT2G40435 146 / 3e-45 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132600 [exp] 135 / 5e-41 AT2G40435 155 / 2e-49 unknown protein Potri.006G106900 [exp] 134 / 1e-40 AT2G40435 150 / 4e-47 unknown protein Potri.013G154100 [exp] 123 / 8e-36 AT2G40435 126 / 9e-38 unknown protein Potri.019G126800 [exp] 120 / 1e-34 AT2G40435 144 / 1e-44 unknown protein Potri.004G060800 [exp] 59 / 3e-11 AT1G29270 69 / 4e-15 unknown protein Potri.011G070000 [exp] 48 / 4e-07 AT1G29270 75 / 2e-17 unknown protein Potri.015G105200 [exp] 40 / 0.001 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009089 pacid=23172396 polypeptide=Lus10009089 locus=Lus10009089.g ID=Lus10009089.BGIv1.0 annot-version=v1.0 ATGGGATCGAGCAGCAAGAAGCAGAAGGAGAAGCTGAGGAAGAAGAAGGAATCTCTCTTCGATAATCTCCAGCTTCTCCGTGCTGTTACCAACTCTTCCG CTACGAACAAGGAATCGATCATAGTCGACGCGACCAAGTACATCGAGGAGTTGAAGGAGAAAGTCGAACGTTTGAGCCACGATGAAGATCGTCAGTACTA CTCTTGTACCACTCATGAATTAGCTTCATTCTCGTCTCTCAATTCTAATTTACCAACGGTAAACGTGGAAACCCTAGAGAAAGGGGGGTTCTTGATAAAC GTGGTGTCGGAAAACAACTGTCCAGGTTTGCTGGTGTGGATTCTGGAAGCCTTCCATGAATTGGGGCTTGACGTTCTCAATCTGGATGCTAGGGTTTCCT CTTCCGACACTTTCCAACTCCAAGCTGTTGGCGGCGGCGGCGGCGGCGATAAGCAAGAGAGCATGGATGGTGAGATGGTGAAGGAAGCGGTGGAGGAAGC CATAAACAACTGGAATGCAACTACAGGTGCTGCTAGTACTACTAGTCCTGATCATGATGATCTTGACCAAAACGACGACACTTAA
AA sequence Show only first row Show all	>Lus10009089 pacid=23172396 polypeptide=Lus10009089 locus=Lus10009089.g ID=Lus10009089.BGIv1.0 annot-version=v1.0 MGSSSKKQKEKLRKKKESLFDNLQLLRAVTNSSATNKESIIVDATKYIEELKEKVERLSHDEDRQYYSCTTHELASFSSLNSNLPTVNVETLEKGGFLIN VVSENNCPGLLVWILEAFHELGLDVLNLDARVSSSDTFQLQAVGGGGGGDKQESMDGEMVKEAVEEAINNWNATTGAASTTSPDHDDLDQNDDT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G40435			unknown protein		Lus10009089 [exp]	0	1
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10004349 [exp]	7.1	0.8512
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10006180 [exp]	10.5	0.7141
AT1G62500			Bifunctional inhibitor/lipid-t...		Lus10028930 [exp]	22.1	0.7670
AT1G10850			Leucine-rich repeat protein ki...		Lus10013073 [exp]	47.3	0.7135
					Lus10025138 [exp]	51.8	0.6674
AT3G54400			Eukaryotic aspartyl protease f...		Lus10008654 [exp]	99.6	0.6806
AT1G64520		RPN12A	regulatory particle non-ATPase...		Lus10003197 [exp]	147.2	0.6615
AT3G06778			Chaperone DnaJ-domain superfam...		Lus10016835 [exp]	168.4	0.6535

Compare expression of checked genes

Lus10009089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.