Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G05340 179 / 2e-55 Peroxidase superfamily protein (.1) AT5G06730 167 / 2e-50 Peroxidase superfamily protein (.1) AT5G06720 166 / 2e-50 ATPA2 peroxidase 2 (.1) AT4G11290 164 / 1e-49 Peroxidase superfamily protein (.1) AT5G58390 162 / 3e-49 Peroxidase superfamily protein (.1) AT4G16270 161 / 4e-48 Peroxidase superfamily protein (.1) AT5G15180 159 / 8e-48 Peroxidase superfamily protein (.1) AT2G18150 159 / 1e-47 Peroxidase superfamily protein (.1) AT1G68850 159 / 2e-47 Peroxidase superfamily protein (.1) AT5G58400 158 / 3e-47 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025256 [exp] 322 / 2e-111 AT5G05340 290 / 4e-97 Peroxidase superfamily protein (.1) Lus10009937 [exp] 195 / 9e-62 AT5G05340 347 / 6e-120 Peroxidase superfamily protein (.1) Lus10025255 [exp] 184 / 1e-57 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10024209 [exp] 176 / 4e-54 AT1G14550 432 / 3e-153 Peroxidase superfamily protein (.1) Lus10034207 [exp] 175 / 6e-54 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009936 [exp] 174 / 1e-53 AT5G05340 361 / 5e-125 Peroxidase superfamily protein (.1) Lus10008581 [exp] 173 / 3e-53 AT5G05340 367 / 6e-128 Peroxidase superfamily protein (.1) Lus10000346 [exp] 173 / 2e-52 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1) Lus10029065 [exp] 172 / 2e-52 AT5G05340 338 / 2e-115 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G154400 [exp] 206 / 2e-66 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.016G132700 [exp] 189 / 1e-59 AT5G05340 367 / 2e-127 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 178 / 4e-55 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 176 / 2e-54 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.001G458900 [exp] 176 / 2e-54 AT1G14540 389 / 3e-136 Peroxidase superfamily protein (.1) Potri.001G458700 [exp] 175 / 5e-54 AT1G14540 394 / 4e-138 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 175 / 6e-54 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1) Potri.010G236900 [exp] 175 / 6e-54 AT1G14550 407 / 2e-143 Peroxidase superfamily protein (.1) Potri.010G236890 [exp] 173 / 2e-53 AT1G14550 417 / 3e-147 Peroxidase superfamily protein (.1) Potri.016G058200 [exp] 172 / 1e-52 AT5G06720 428 / 2e-151 peroxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009090 pacid=23172420 polypeptide=Lus10009090 locus=Lus10009090.g ID=Lus10009090.BGIv1.0 annot-version=v1.0 ATGGCTCCTCCAAGTCTTATTAACCACAGTTTTACCACACTACTTCTCCTGACTAGTTTCCTTGCCGTAGGGACCTCGATCTCTTTGGTGCTCGGCTTAT CTCTCAATTCCTACGATCAGACGTGCCCTCTCGCCACCTCCAAGATCAAAGAGATCGTCAACCAAGCAGTCCAGACTGAGAGGCGCATGGGTGCCTCTCT CATTCGTCTTCACTTCCACGATTGCTTGTCAATATGTCATGGATTGGTACTGCTAGACGAAGTGGCACCAAGTTTGGTAGGAGAGAAGACTGCGGCGCCA AACGACAACTCCTTGAGAGGGTTCGATGTGATAGACAACATCAAAGCGGCGTTGGAAAGTATGTGTCCAGGAGTTGTGTCCTGTTCTGATATCTTGACGG TGGCGGCCCGCGATGCCGTTGTTGCTCTTGGAGGGCCAAGTTGGCAAGTTCTACTTGGAAGAAAAGACTCCACCAACGCGAATTTCTCCAGCGCACTCGA AAACCTCCCTTCTCCGTTTATAGATTCCAACGACCTCGCCGCTGCCTTTGCCCTCAAGGGCTTTACATCCCAGGAAATGGTCACTCTCTCTGGTACTCTA GAGATAGGTGGTCTTGTTATGAAGCAATGA
AA sequence Show only first row Show all	>Lus10009090 pacid=23172420 polypeptide=Lus10009090 locus=Lus10009090.g ID=Lus10009090.BGIv1.0 annot-version=v1.0 MAPPSLINHSFTTLLLLTSFLAVGTSISLVLGLSLNSYDQTCPLATSKIKEIVNQAVQTERRMGASLIRLHFHDCLSICHGLVLLDEVAPSLVGEKTAAP NDNSLRGFDVIDNIKAALESMCPGVVSCSDILTVAARDAVVALGGPSWQVLLGRKDSTNANFSSALENLPSPFIDSNDLAAAFALKGFTSQEMVTLSGTL EIGGLVMKQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10009090 [exp]	0	1
AT5G67360		ARA12	Subtilase family protein (.1)		Lus10027891 [exp]	4.9	1.0000
					Lus10002313 [exp]	6.9	1.0000
					Lus10026042 [exp]	8.5	1.0000
					Lus10024762 [exp]	11.0	1.0000
					Lus10006296 [exp]	11.1	1.0000
					Lus10012669 [exp]	14.7	1.0000
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10020731 [exp]	15.9	1.0000
					Lus10013504 [exp]	15.9	1.0000
					Lus10032814 [exp]	18.0	1.0000
AT2G36190		ATCWINV4	cell wall invertase 4 (.1)		Lus10014217 [exp]	18.8	1.0000

Compare expression of checked genes

Lus10009090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.