Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58390 130 / 5e-38 Peroxidase superfamily protein (.1) AT5G05340 122 / 1e-34 Peroxidase superfamily protein (.1) AT5G58400 120 / 1e-33 Peroxidase superfamily protein (.1) AT1G14550 117 / 9e-33 Peroxidase superfamily protein (.1) AT1G14540 114 / 1e-31 Peroxidase superfamily protein (.1) AT4G36430 108 / 3e-29 Peroxidase superfamily protein (.1) AT5G06720 104 / 1e-27 ATPA2 peroxidase 2 (.1) AT2G18150 102 / 5e-27 Peroxidase superfamily protein (.1) AT2G18140 102 / 6e-27 Peroxidase superfamily protein (.1) AT5G66390 99 / 1e-25 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025255 [exp] 232 / 2e-77 AT5G05340 337 / 2e-115 Peroxidase superfamily protein (.1) Lus10006534 [exp] 136 / 8e-40 AT5G05340 399 / 3e-140 Peroxidase superfamily protein (.1) Lus10000625 [exp] 130 / 1e-39 AT5G05340 172 / 5e-54 Peroxidase superfamily protein (.1) Lus10009935 [exp] 132 / 2e-38 AT5G05340 358 / 9e-124 Peroxidase superfamily protein (.1) Lus10034207 [exp] 132 / 2e-38 AT5G05340 454 / 8e-162 Peroxidase superfamily protein (.1) Lus10009933 [exp] 125 / 1e-35 AT5G05340 364 / 2e-126 Peroxidase superfamily protein (.1) Lus10024207 [exp] 123 / 3e-35 AT1G14550 322 / 2e-110 Peroxidase superfamily protein (.1) Lus10030148 [exp] 123 / 3e-35 AT5G05340 410 / 3e-145 Peroxidase superfamily protein (.1) Lus10000346 [exp] 124 / 1e-34 AT5G05340 394 / 8e-137 Peroxidase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G132900 [exp] 163 / 2e-50 AT5G05340 350 / 6e-121 Peroxidase superfamily protein (.1) Potri.006G107000 [exp] 161 / 8e-50 AT5G05340 349 / 2e-120 Peroxidase superfamily protein (.1) Potri.016G132800 [exp] 160 / 1e-49 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1) Potri.014G143200 [exp] 142 / 2e-42 AT5G05340 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.013G083600 [exp] 142 / 3e-42 AT5G05340 483 / 2e-173 Peroxidase superfamily protein (.1) Potri.013G154400 [exp] 138 / 7e-41 AT5G05340 363 / 3e-126 Peroxidase superfamily protein (.1) Potri.013G156500 [exp] 127 / 1e-36 AT5G05340 441 / 1e-156 Peroxidase superfamily protein (.1) Potri.010G236850 [exp] 125 / 7e-36 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236910 [exp] 125 / 7e-36 AT1G14550 404 / 5e-142 Peroxidase superfamily protein (.1) Potri.010G236870 [exp] 124 / 1e-35 AT1G14550 409 / 3e-144 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [flax] [poplar] Peroxidase PF00141 [flax] [poplar] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Lus10009091 pacid=23172415 polypeptide=Lus10009091 locus=Lus10009091.g ID=Lus10009091.BGIv1.0 annot-version=v1.0 ATGCAAGGCCTCAACGAAAGGGACCTTGTAGCAATCGGGTTCGCGCAGTGCTGGTTCTTCAGGAACCGAATCTTCAACGAGACATCCGCCAGCAACATCA ACCCTAAGTTGGCCAGCGAGCGCCGTTCAAACTGTTTCGCCAACTCCGGAGACACCAACCTCTCTTCCTTGAACAGCTCAGCAGCCAGCTTCGACATTTC GTACTTCAAGAACTTGGTCGCCAAGAAAGGGTTGCTTCACTCCGACCAAGCCCTCTTCGCTGGCGGGTCCACCGACTCCCTGGTCAGCACTTACAGCTCG AACGAAAGGAGTTTCTGGTACGATTTCGCCAACTCAATGGTTAAGATGGGGAACATTAAGCCGTTGACTGGGAACCGTGGTCAGATTCGAGCCAACTGCA GGAGGGTCAACTAA
AA sequence Show only first row Show all	>Lus10009091 pacid=23172415 polypeptide=Lus10009091 locus=Lus10009091.g ID=Lus10009091.BGIv1.0 annot-version=v1.0 MQGLNERDLVAIGFAQCWFFRNRIFNETSASNINPKLASERRSNCFANSGDTNLSSLNSSAASFDISYFKNLVAKKGLLHSDQALFAGGSTDSLVSTYSS NERSFWYDFANSMVKMGNIKPLTGNRGQIRANCRRVN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G05340			Peroxidase superfamily protein...		Lus10009091 [exp]	0	1
AT5G53910			RING/U-box superfamily protein...		Lus10011380 [exp]	7.6	0.6570
					Lus10013260 [exp]	10.8	0.6570
					Lus10005297 [exp]	13.2	0.6570
AT3G52490			Double Clp-N motif-containing ...		Lus10024536 [exp]	15.2	0.6570
AT2G06090			Plant self-incompatibility pro...		Lus10011896 [exp]	17.0	0.6570
					Lus10006529 [exp]	18.7	0.6570
AT5G33340		CDR1	CONSTITUTIVE DISEASE RESISTANC...		Lus10039858 [exp]	19.2	0.6535
					Lus10035557 [exp]	20.1	0.6570
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Lus10006709 [exp]	21.1	0.6424
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10015614 [exp]	21.5	0.6570

Compare expression of checked genes

Lus10009091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.