Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT2G14560 149 / 3e-45 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT1G33840 145 / 2e-43 Protein of unknown function (DUF567) (.1) AT3G11740 133 / 6e-39 Protein of unknown function (DUF567) (.1) AT3G16900 131 / 2e-38 Protein of unknown function (DUF567) (.1) AT3G56180 71 / 4e-15 Protein of unknown function (DUF567) (.1) AT3G15810 65 / 1e-12 Protein of unknown function (DUF567) (.1) AT3G10986 62 / 7e-12 Protein of unknown function (DUF567) (.1) AT1G80120 47 / 3e-06 Protein of unknown function (DUF567) (.1) AT2G38640 44 / 2e-05 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025254 [exp] 389 / 2e-139 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 297 / 4e-103 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 290 / 1e-100 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009093 [exp] 273 / 4e-94 AT5G01750 147 / 1e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 251 / 3e-85 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 251 / 3e-85 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 239 / 2e-80 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 201 / 3e-65 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 199 / 1e-64 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G131850 [exp] 200 / 5e-65 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 199 / 2e-64 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 197 / 9e-64 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 179 / 7e-57 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 176 / 8e-56 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 176 / 9e-56 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 172 / 3e-54 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 170 / 4e-53 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 169 / 8e-53 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 168 / 2e-52 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10009092 pacid=23172414 polypeptide=Lus10009092 locus=Lus10009092.g ID=Lus10009092.BGIv1.0 annot-version=v1.0 ATGGCCAACACGGTTCCAGCCATATCTGTGTACTTGCCCCTCGAGCATCCAGCGGTTGTGATCAACTCGTGTTACCTGGCCAAGTACCCAGTGGACCTAA CAGTCACGGCAGATAATGAATCCACCGTCACGGACTTCAAGGGGACCAACATCTTCCGGATCAAGAACAAACGCTTGAGTCTTCACAGTCACCGCAAGTT GATGGATGCCTCCGGCAACGTGCTTGTCTCCATGTCACAGAAGGTAATGACGGCGCACGGGAGATGGCAATCATTTCGCGGAGAGAGCGATCAAGATTTG CTGTTCAGCGTGAAGAAGTCATCCATGCTACAGGGGGAGCCTAATTTCGATGTTTTCTTGGCCGAAAACACAAAGGAAAAAGTCCCTGATTTCAGAATCA AGGGAATCTACCTTGAGAACTCCTGCATCATCTATCTCGGCAACACCAACCAGATTGTCGCTCGGATGTATAGAGATCGCAGCATGGAGTCGGAAAGTTT TAGGATGACAATCTACCCAAATGTTGATTACGCTTTTATTGTCTCTCTCGTGATGGTGACTATTAACGAGCTAAACCAATACTGCAAAAGCCAAAAGTAT GGCAAGATCGGGGATGGTGCCCAGACTGTTATGAATATCCTTTCTAGCTAA
AA sequence Show only first row Show all	>Lus10009092 pacid=23172414 polypeptide=Lus10009092 locus=Lus10009092.g ID=Lus10009092.BGIv1.0 annot-version=v1.0 MANTVPAISVYLPLEHPAVVINSCYLAKYPVDLTVTADNESTVTDFKGTNIFRIKNKRLSLHSHRKLMDASGNVLVSMSQKVMTAHGRWQSFRGESDQDL LFSVKKSSMLQGEPNFDVFLAENTKEKVPDFRIKGIYLENSCIIYLGNTNQIVARMYRDRSMESESFRMTIYPNVDYAFIVSLVMVTINELNQYCKSQKY GKIGDGAQTVMNILSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10009092 [exp]	0	1
AT5G01750			Protein of unknown function (D...		Lus10025254 [exp]	1.0	0.9178
AT1G65810			P-loop containing nucleoside t...		Lus10037353 [exp]	2.0	0.8761
AT4G27290			S-locus lectin protein kinase ...		Lus10037731 [exp]	2.8	0.8946
AT3G27540			beta-1,4-N-acetylglucosaminylt...		Lus10032088 [exp]	3.7	0.8598
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Lus10034390 [exp]	3.9	0.8921
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10018828 [exp]	6.8	0.8220
AT1G03495			HXXXD-type acyl-transferase fa...		Lus10039720 [exp]	7.2	0.8205
AT1G70520		ASG6, CRK2	ALTERED SEED GERMINATION 6, cy...		Lus10010960 [exp]	8.5	0.8692
					Lus10012544 [exp]	8.7	0.8701
AT5G04220		SYT3, NTMCTYPE1...	synaptotagmin 3, Calcium-depen...		Lus10040414 [exp]	9.1	0.7792

Compare expression of checked genes

Lus10009092 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.