Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 147 / 9e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT2G14560 138 / 2e-41 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 128 / 2e-37 Protein of unknown function (DUF567) (.1) AT1G33840 124 / 1e-35 Protein of unknown function (DUF567) (.1) AT3G16900 113 / 6e-32 Protein of unknown function (DUF567) (.1) AT3G56180 66 / 1e-13 Protein of unknown function (DUF567) (.1) AT3G10986 66 / 2e-13 Protein of unknown function (DUF567) (.1) AT3G15810 60 / 3e-11 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009092 [exp] 273 / 4e-94 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 266 / 2e-91 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 256 / 7e-88 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 250 / 2e-85 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 211 / 1e-69 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 205 / 2e-67 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 205 / 2e-67 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 178 / 8e-57 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014154 [exp] 175 / 1e-55 AT5G01750 206 / 2e-67 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G130500 [exp] 166 / 3e-52 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131850 [exp] 164 / 1e-51 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 163 / 6e-51 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 162 / 7e-51 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 162 / 1e-50 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 154 / 2e-47 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 142 / 6e-43 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 142 / 9e-43 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 134 / 1e-39 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 130 / 3e-38 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10009093 pacid=23172416 polypeptide=Lus10009093 locus=Lus10009093.g ID=Lus10009093.BGIv1.0 annot-version=v1.0 ATGGCAGATCACGATTCCACCGCCGCGGACTTCAACGGGACTATCATCTTCCAGATCAAGAATAAACGCATGAGTCTTCACGGTCACCGGAAGTTGTTGG ATGCCTCCGGCAACGTGCTTGTCTCCATGTCACATAAGGTAATGTCGGCGCACAGGAGATGGCAATCATTTCGTGGAAATAGTGAGGAGTTACTGTTCAG CGTGAAGCAGTCATCCATGCTACAGGTGGAGCCTAAATTAGACGTTTTTTTGGCTGGAAACACCAAGGAAAAAGTCCCAGATTTTAGGATCAAGGGAACC TACGTTGAGAATTCCTGCATCATCTATCTCGGCAACACCAACCAGGTCGTCGCCCGGATGTATAGAGATCGCAGTACAGATTTAATTAGTTATAGGGTAA CGATCTATCCAAATGTTGATTATGCTTTCATTATCTCTCTTATGATGGTCACTATTAATGAGCTGAACCACTACCGCATAGGAGAAGAGTATGGCAAGTC CGCAAGGGATGCCCAAGATATTATGGATGCCCTTCTTAATAATTAG
AA sequence Show only first row Show all	>Lus10009093 pacid=23172416 polypeptide=Lus10009093 locus=Lus10009093.g ID=Lus10009093.BGIv1.0 annot-version=v1.0 MADHDSTAADFNGTIIFQIKNKRMSLHGHRKLLDASGNVLVSMSHKVMSAHRRWQSFRGNSEELLFSVKQSSMLQVEPKLDVFLAGNTKEKVPDFRIKGT YVENSCIIYLGNTNQVVARMYRDRSTDLISYRVTIYPNVDYAFIISLMMVTINELNHYRIGEEYGKSARDAQDIMDALLNN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10009093 [exp]	0	1
AT1G27180			disease resistance protein (TI...		Lus10018309 [exp]	1.0	0.9195
					Lus10016821 [exp]	1.4	0.8917
AT5G22380	NAC	ANAC090	NAC domain containing protein ...		Lus10020643 [exp]	5.3	0.8764
AT3G29000			Calcium-binding EF-hand family...		Lus10034463 [exp]	5.5	0.8783
AT5G22390			Protein of unknown function (D...		Lus10004863 [exp]	8.9	0.8850
AT5G36930			Disease resistance protein (TI...		Lus10042714 [exp]	13.9	0.7991
					Lus10019472 [exp]	15.3	0.8860
					Lus10035412 [exp]	17.4	0.8598
AT5G26170	WRKY	ATWRKY50, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036624 [exp]	18.8	0.8828
AT5G23510			unknown protein		Lus10029154 [exp]	22.2	0.8354

Compare expression of checked genes

Lus10009093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.