Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G01750 150 / 8e-46 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT2G14560 127 / 6e-37 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 125 / 2e-36 Protein of unknown function (DUF567) (.1) AT1G33840 123 / 4e-35 Protein of unknown function (DUF567) (.1) AT3G16900 115 / 2e-32 Protein of unknown function (DUF567) (.1) AT3G56180 74 / 4e-16 Protein of unknown function (DUF567) (.1) AT3G10986 61 / 2e-11 Protein of unknown function (DUF567) (.1) AT3G15810 55 / 4e-09 Protein of unknown function (DUF567) (.1) AT2G38640 49 / 2e-07 Protein of unknown function (DUF567) (.1) AT1G80120 45 / 5e-06 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025254 [exp] 296 / 4e-103 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 290 / 1e-100 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025253 [exp] 278 / 4e-96 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009093 [exp] 256 / 1e-87 AT5G01750 147 / 1e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 241 / 4e-81 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 241 / 4e-81 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 239 / 2e-80 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 190 / 2e-61 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 184 / 6e-59 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G131850 [exp] 192 / 5e-62 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 187 / 6e-60 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 183 / 1e-58 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 166 / 4e-52 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 166 / 5e-52 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 164 / 4e-51 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130400 [exp] 164 / 7e-51 AT5G01750 181 / 3e-57 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 158 / 7e-49 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 157 / 1e-48 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 153 / 6e-47 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10009094 pacid=23172434 polypeptide=Lus10009094 locus=Lus10009094.g ID=Lus10009094.BGIv1.0 annot-version=v1.0 ATGAACAACCCCATTCCGGCCGTGTTTGAGTATTTGCCCCTCGACCATCCAACGGTGGTGATCAACTCGTATTTCCTGGCCCGATACCCAGTCGACCTAA GAGTCATGGCAGATCACGATTCCACAAACACTGTTATGGACTTCAATGGGACTATCATCTTCCAGAACGAGAATAAACGAATGAGTCTCCACTGCCACCG AAAGTTGATGGATGCCTCTGGCAACGTGCTTGTCTCCATGTCACAGAAGGTAATGTCGGCTCACCAGAGATGGCAATTCCTTAGTGGAGATAGTGAGGAT TTGTTATTCAGCGTGAAGAAGGCATCAACGTTCCAGAACGAGCATAAATTAGATGTTTTCTTGACCGGAAACACTAAGGAAGAAGTGCCTGATTTTAGGA TCGAGGGAACCTACGGTGACAATTCCTGTATCATCTATCTCGGCAACACCAACCAGATCGTTGCTCAGATGTACAGAGATCGCACGATAGAGTCGAGAAA TTTTAGAGTGACGATTTACCCAAATGTTGATTATGCTTTCATTATCTCTCTTGTGATGGTGACTATTATTGAGCTGAACCAATATCGCAAAGGAGGACAG TATAACTAG
AA sequence Show only first row Show all	>Lus10009094 pacid=23172434 polypeptide=Lus10009094 locus=Lus10009094.g ID=Lus10009094.BGIv1.0 annot-version=v1.0 MNNPIPAVFEYLPLDHPTVVINSYFLARYPVDLRVMADHDSTNTVMDFNGTIIFQNENKRMSLHCHRKLMDASGNVLVSMSQKVMSAHQRWQFLSGDSED LLFSVKKASTFQNEHKLDVFLTGNTKEEVPDFRIEGTYGDNSCIIYLGNTNQIVAQMYRDRTIESRNFRVTIYPNVDYAFIISLVMVTIIELNQYRKGGQ YN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G01750			Protein of unknown function (D...		Lus10009094 [exp]	0	1
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	3.9	0.8279
AT3G29000			Calcium-binding EF-hand family...		Lus10019090 [exp]	4.0	0.8347
AT5G36930			Disease resistance protein (TI...		Lus10020534 [exp]	9.5	0.8383
AT2G29350		SAG13	senescence-associated gene 13 ...		Lus10040737 [exp]	12.1	0.7859
AT3G61370			Protein of unknown function (D...		Lus10001364 [exp]	13.1	0.7731
AT4G27300			S-locus lectin protein kinase ...		Lus10016864 [exp]	13.3	0.7719
AT1G04960			Protein of unknown function (D...		Lus10033807 [exp]	15.0	0.7951
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Lus10017787 [exp]	21.4	0.7797
AT2G39435			Phosphatidylinositol N-acetygl...		Lus10030320 [exp]	21.6	0.7954
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10033594 [exp]	22.6	0.7752

Compare expression of checked genes

Lus10009094 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.