Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G14560 43 / 3e-05 LURP1 LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA, Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT5G01750 43 / 4e-05 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) AT3G11740 41 / 0.0001 Protein of unknown function (DUF567) (.1) AT1G33840 40 / 0.0003 Protein of unknown function (DUF567) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025253 [exp] 139 / 4e-41 AT5G01750 169 / 4e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10014021 [exp] 117 / 1e-32 AT5G01750 202 / 6e-66 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10002477 [exp] 115 / 7e-32 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10001255 [exp] 115 / 7e-32 AT5G01750 218 / 5e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10025254 [exp] 112 / 6e-31 AT5G01750 166 / 1e-51 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009094 [exp] 111 / 2e-30 AT5G01750 150 / 1e-45 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10019896 [exp] 110 / 5e-30 AT5G01750 169 / 3e-53 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10009092 [exp] 110 / 7e-30 AT5G01750 161 / 7e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Lus10022754 [exp] 80 / 3e-18 AT5G01750 214 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G131850 [exp] 95 / 4e-24 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130500 [exp] 94 / 1e-23 AT5G01750 218 / 6e-72 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130700 [exp] 94 / 1e-23 AT5G01750 209 / 2e-68 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G130800 [exp] 84 / 5e-20 AT5G01750 162 / 4e-50 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131300 [exp] 82 / 2e-19 AT5G01750 143 / 7e-43 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131100 [exp] 77 / 2e-17 AT5G01750 154 / 3e-47 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131600 [exp] 75 / 8e-17 AT5G01750 128 / 4e-37 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131400 [exp] 73 / 6e-16 AT5G01750 147 / 3e-44 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131800 [exp] 73 / 7e-16 AT5G01750 213 / 3e-70 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2) Potri.016G131701 [exp] 63 / 4e-12 AT5G01750 201 / 2e-65 Protein of unknown function (DUF567) (.1), Protein of unknown function (DUF567) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0395 [flax] [poplar] Tubby_C PF04525 [flax] [poplar] LOR LURP-one-related
Representative CDS sequence Show only first row Show all	>Lus10009095 pacid=23172421 polypeptide=Lus10009095 locus=Lus10009095.g ID=Lus10009095.BGIv1.0 annot-version=v1.0 ATGGCCGCCGGTCAACTCCCCAACCCAATTCCGGCCAAGTTTGTGTATAGGCCCCTCGAGCCTCCGATGGTCGTGATCAGCCCGTATTTTCTGGCTGAAT ACCCAGTGGACCTATGGGTCATGGCATATAATGATTCCACCGTCATGGATTTCAATGGGACCGTTATCTTCGGCATCAAGAATAAACGCTTGAGTCTTCA CAATCGCCGGAAGTTGATGGATACCTCTGACAACGTGCTTGTTTCCATGTCACAGAAGTTAGAATATATAACGGCGAACTTACATCATGGCCGCCGGTCA ACTCCCAAACCCCATTCCGGCCATGTTTGCTTATTCCCCCCTGGAGCTTCCTGTGGTGGTGATCAACCCGTATGGACCTATGGGTCCTCGCAAATAATGA TTCCACCGTCACGGACTTCAACGGGACCGTCATCTTCCGGACCACTGAGTCTTCACAGTCGTCGGAAGGTGATGGATGCCTCCGGTAATGTGCTTGTCTC CATGTCACAGAAGGTAATGACGGCGCACGGAAGATGGCAAGCATTTCGTGGAGATAGTGATGATGATTTGTTGTTGTTTAGCATGAAACAGACAAGTCCC TGA
AA sequence Show only first row Show all	>Lus10009095 pacid=23172421 polypeptide=Lus10009095 locus=Lus10009095.g ID=Lus10009095.BGIv1.0 annot-version=v1.0 MAAGQLPNPIPAKFVYRPLEPPMVVISPYFLAEYPVDLWVMAYNDSTVMDFNGTVIFGIKNKRLSLHNRRKLMDTSDNVLVSMSQKLEYITANLHHGRRS TPKPHSGHVCLFPPGASCGGDQPVWTYGSSQIMIPPSRTSTGPSSSGPLSLHSRRKVMDASGNVLVSMSQKVMTAHGRWQAFRGDSDDDLLLFSMKQTSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G14560		LURP1	LATE UPREGULATED IN RESPONSE T...		Lus10009095 [exp]	0	1
					Lus10027005 [exp]	6.3	0.8650
					Lus10032767 [exp]	13.0	0.8622
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10038126 [exp]	16.2	0.8166
					Lus10036765 [exp]	17.5	0.8401
					Lus10033211 [exp]	18.0	0.8222
					Lus10035062 [exp]	19.6	0.8453
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Lus10021142 [exp]	19.6	0.8401
AT2G16190			unknown protein		Lus10011284 [exp]	21.5	0.8401
					Lus10006395 [exp]	23.2	0.8401
AT2G20840			Secretory carrier membrane pro...		Lus10031627 [exp]	24.2	0.8143

Compare expression of checked genes

Lus10009095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.