Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06930 46 / 3e-06 unknown protein AT4G25845 40 / 0.0002 unknown protein AT4G25850 40 / 0.0007 ORP4B OSBP(oxysterol binding protein)-related protein 4B (.1), OSBP(oxysterol binding protein)-related protein 4B (.2) AT2G40475 39 / 0.0008 ASG8 ALTERED SEED GERMINATION 8, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025251 [exp] 256 / 3e-87 AT1G06930 47 / 8e-07 unknown protein Lus10029060 [exp] 69 / 1e-14 AT5G01790 46 / 2e-06 unknown protein Lus10034209 [exp] 69 / 1e-14 AT1G06930 52 / 8e-09 unknown protein Lus10012896 [exp] 67 / 2e-13 AT2G40475 52 / 6e-08 ALTERED SEED GERMINATION 8, unknown protein Lus10030550 [exp] 62 / 2e-11 AT5G01790 50 / 2e-07 unknown protein Lus10014158 [exp] 48 / 2e-06 AT1G06930 45 / 8e-06 unknown protein Lus10009929 [exp] 41 / 0.0003 AT1G06930 61 / 1e-11 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133200 [exp] 68 / 6e-14 AT2G40475 50 / 1e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.006G107200 [exp] 66 / 2e-13 AT2G40475 49 / 4e-07 ALTERED SEED GERMINATION 8, unknown protein Potri.013G083101 [exp] 51 / 7e-08 AT2G40475 60 / 3e-11 ALTERED SEED GERMINATION 8, unknown protein Potri.013G156100 [exp] 47 / 2e-06 AT1G06930 / unknown protein Potri.018G091900 [exp] 45 / 7e-06 AT4G25845 54 / 2e-09 unknown protein Potri.006G167300 [exp] 44 / 2e-05 AT4G25845 78 / 2e-18 unknown protein Potri.019G127400 [exp] 44 / 3e-05 AT1G06930 / unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009096 pacid=23172422 polypeptide=Lus10009096 locus=Lus10009096.g ID=Lus10009096.BGIv1.0 annot-version=v1.0 ATGTTCGGTGGCCGCCGGAGGAGCAAGGCTAACAGTAGTCCAGGCGACCTCATAATTCCCCCGGAGAAGACGACGACCGGATCAGAAGACAACAACCACA ATGGCAACAAGTTGTACTCAAGGCTGTTGTCAAGGGAAAACAATTACCCTTCAGTCAGAGTATACTACGGAGAAGTCTCTGTAGCAGTCCCCTTCACTTG GGAATCCCAGCCTGGTACTCCCAAATACCGCCACTTCTCACACTCCTCCGACGATCTCATCCCTCCCCTCACCCCTCCTCCTTCCTACTTTTCCAACTCC ACCACTCCTCTTCATCACACCATCTCCTCTTCTTCTTCTTCCTCATCTCGCCACGTCAGCAAGAACACTAGGAAGAACACCTACTCCCTCCCTAACTTTA TTAGCTTCCTCTCCAGATCATCATTCCCCAACAAACCCCTCACCGCCGCCACGTCATCCGACTCCTCCTTCAGTTCTTCTTCCTCTTCAACTTCTTCCAC TACTCTTGTGTACCGTCGGCGAAAGACGGAGTCCATGCTGGATCATGAACCCTCCTTTGGATCCGGATCTGGATCGCCTACTTCGATACTCTGCTTTGGA GGAGGCACCACCTGGCGTCGTGGCCGCTACGGCTGCTTGTAA
AA sequence Show only first row Show all	>Lus10009096 pacid=23172422 polypeptide=Lus10009096 locus=Lus10009096.g ID=Lus10009096.BGIv1.0 annot-version=v1.0 MFGGRRRSKANSSPGDLIIPPEKTTTGSEDNNHNGNKLYSRLLSRENNYPSVRVYYGEVSVAVPFTWESQPGTPKYRHFSHSSDDLIPPLTPPPSYFSNS TTPLHHTISSSSSSSSRHVSKNTRKNTYSLPNFISFLSRSSFPNKPLTAATSSDSSFSSSSSSTSSTTLVYRRRKTESMLDHEPSFGSGSGSPTSILCFG GGTTWRRGRYGCL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G06930			unknown protein		Lus10009096 [exp]	0	1
AT5G15140			Galactose mutarotase-like supe...		Lus10005251 [exp]	5.2	0.9273
AT1G51940			protein kinase family protein ...		Lus10006841 [exp]	7.7	0.8976
AT3G07010			Pectin lyase-like superfamily ...		Lus10011885 [exp]	8.8	0.9206
AT1G75710	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10034522 [exp]	10.5	0.8831
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10000237 [exp]	10.7	0.8632
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10024388 [exp]	11.0	0.9047
AT3G58120	bZIP	ATBZIP61	Basic-leucine zipper (bZIP) tr...		Lus10002185 [exp]	11.5	0.9201
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Lus10037200 [exp]	12.6	0.8693
AT4G14090			UDP-Glycosyltransferase superf...		Lus10040591 [exp]	13.8	0.9172
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	14.3	0.9190

Compare expression of checked genes

Lus10009096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.