Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51650 266 / 5e-79 unknown protein AT3G51640 258 / 5e-76 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025250 [exp] 855 / 0 AT3G51650 686 / 0.0 unknown protein Lus10025247 [exp] 748 / 0 AT3G51650 723 / 0.0 unknown protein Lus10009100 [exp] 698 / 0 AT3G51650 721 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107500 [exp] 473 / 3e-157 AT3G51650 671 / 0.0 unknown protein Potri.016G133700 [exp] 461 / 8e-153 AT3G51650 706 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009097 pacid=23172407 polypeptide=Lus10009097 locus=Lus10009097.g ID=Lus10009097.BGIv1.0 annot-version=v1.0 ATGGCGAAAAGAGGAGAGAATGGGATTAACCTTTCTGAGAGTAGAGTGGAGAAAGCTCGCAGGAAAGCTGAGGAGAAGAGGCAGGCTAGGTTAGAGAGGG AGCTTCTGGAGGAGGAAGAGAGAAAACAGCGGGAGGAGGTTGCTAGGTTAGTTGAGGAGCGCCGAAGGTTGAGGGATGAGAACATGGAGGCTGAGAAAGA CCGGAACAAGCTGTCACCACCAACTAGCAAAGATCATAAAAGGGAAGCAGAAAAAAAACGCCAGGAGAGAAGGAGAGATAAAGATAAGGGATCCAGTAAG AGTAACTCTGATGTGGAAGACATGGAAAAACGTGCTGGTAAAGAAAGTGCAAGGAAAAAAGATTTTGACAAGAAGAGTGATGTCGAGAGAAGGGAACCAC AAAAGTCTGGTACATCTATACACAATTTTAGCCGTGGAAATGCTGGAACCAGGTACATTGACAGGATGAAGGGAACATTTTTATCTCCTTCAAGAGCTTT TAGTGGAAACGGTTTCTTTGGACGGAATGTTAACAATCCTGCTGCTGGTACGAAAGAAGTGAAATTCAACAATTCTGCAGATCAACTTCACATTTCTGCC CAGAGGAGAGAGATATATCCACCTGGTCTGGCTGGGAAATCAAGTATCAATTCCGACTATAAAAATGCTAACCAACCTGTACCATCAGAACAGCAGAGGG CGGGACCTAAGAAGTCATGGCAGCAATTATTTACACCTTCGTCATCCTCAAATACTAATGTCATTAGCCGACCGAATCCAAAACCTCAGGCAGACTTGCA GAAGCCTCAGTTCCCAGGGCAAACATCAACCATACATTCATTCGATAATCCTATTCAGTTTGGGCTGCCATCACCATTTTCTACCCCCATGTATCCCGAT GTGTCCAGCAGATCTAGTTTAAGTTTCTCACCTCCCATTGAGTCCAGTGTCCATCGGATTTCTGAAGAACCAGCGTGTTTTGAAGACCCTTGTTATGTTC CTGATCCCATATCATTGCTTGGGCCTGTCTCGGAGTCCCTGGATAATTTCCAGTTGGACTTGGGCGCTGGTTTTGCATCAGATAGATCTGTAAAGAAGTC GGCTGGATCTCCTGAAGTGAGCAAGCCATCTCCAATCGAGTCCCCATTATCTCGTCGAACTTCTGATGACAAGCACAACAACTGGTTCCCCACCACTCCC AAGTCTCGAGATGTGAATGGCGTTCATAAAAGTGAGATGGGGACATGGCAAATGTGGAAGAGTACTCCTCTTTGTCAAGATGGTCTTGGTTTGGTTGGAG GCTCAGCGAGCTGGCTTTTGCCACCAGAGAAGAGTATTTCGACCGAAGAAGATTTTTTTTCGCATCCTTCCTCTCAGAAGAATACAACATCATTGTTTTC GACAGATGACAAAGCTCTTTCCGGAAATCTCTCTTCTCAGAACGGCTATCTTGGTAATGGCCACAATGGGGTGTTCAGTCCTGTCACTAGCTCGCGTGAC AATCAACCATGGTTGCAGAATGCTTTTTACCATCCATTTTCTAGTAACGAAGGTCATCTCTTTGTCAAAACTGAGGAAGATAATATTCGAGAAAAGATTG GTTTTGGCAGTCCACATAGAGAAGCTTCCAATCTTCCATTTGAGATGCATCCTCAAAATGGTTGGTCCAAGAAGGAGTGGAATGTGCAAGGCAGGGCAGA TGATGTTGTGAAGTCTTCAGTGAACCATCCAAGTAGTATGGAGGGTTTATTTTCCGCCAAACCCTAA
AA sequence Show only first row Show all	>Lus10009097 pacid=23172407 polypeptide=Lus10009097 locus=Lus10009097.g ID=Lus10009097.BGIv1.0 annot-version=v1.0 MAKRGENGINLSESRVEKARRKAEEKRQARLERELLEEEERKQREEVARLVEERRRLRDENMEAEKDRNKLSPPTSKDHKREAEKKRQERRRDKDKGSSK SNSDVEDMEKRAGKESARKKDFDKKSDVERREPQKSGTSIHNFSRGNAGTRYIDRMKGTFLSPSRAFSGNGFFGRNVNNPAAGTKEVKFNNSADQLHISA QRREIYPPGLAGKSSINSDYKNANQPVPSEQQRAGPKKSWQQLFTPSSSSNTNVISRPNPKPQADLQKPQFPGQTSTIHSFDNPIQFGLPSPFSTPMYPD VSSRSSLSFSPPIESSVHRISEEPACFEDPCYVPDPISLLGPVSESLDNFQLDLGAGFASDRSVKKSAGSPEVSKPSPIESPLSRRTSDDKHNNWFPTTP KSRDVNGVHKSEMGTWQMWKSTPLCQDGLGLVGGSASWLLPPEKSISTEEDFFSHPSSQKNTTSLFSTDDKALSGNLSSQNGYLGNGHNGVFSPVTSSRD NQPWLQNAFYHPFSSNEGHLFVKTEEDNIREKIGFGSPHREASNLPFEMHPQNGWSKKEWNVQGRADDVVKSSVNHPSSMEGLFSAKP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51650			unknown protein		Lus10009097 [exp]	0	1
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	2.6	0.8718
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	4.6	0.7905
AT2G32910			DCD (Development and Cell Deat...		Lus10004128 [exp]	6.0	0.8169
AT5G51280			DEAD-box protein abstrakt, put...		Lus10023252 [exp]	6.5	0.8417
AT5G25510			Protein phosphatase 2A regulat...		Lus10008104 [exp]	6.6	0.8419
AT2G33835	C3HZnF	FES1	FRIGIDA-ESSENTIAL 1, Zinc fing...		Lus10015319 [exp]	7.1	0.8110
AT3G09070			Protein of unknown function (D...		Lus10027785 [exp]	11.0	0.8350
AT1G71850			Ubiquitin carboxyl-terminal hy...		Lus10035074 [exp]	12.0	0.8080
AT1G75590			SAUR-like auxin-responsive pro...		Lus10007552 [exp]	12.7	0.7890
AT5G25510			Protein phosphatase 2A regulat...		Lus10013141 [exp]	14.3	0.8307

Compare expression of checked genes

Lus10009097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.