Plant FIBer expression Database

Lus10009098 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G51650 286 / 4e-92 unknown protein
AT3G51640 285 / 6e-92 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025250
[exp]
347 / 1e-115 AT3G51650 686 / 0.0 unknown protein
Lus10025247
[exp]
342 / 1e-113 AT3G51650 723 / 0.0 unknown protein
Lus10009100
[exp]
337 / 5e-112 AT3G51650 721 / 0.0 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G107500
[exp]
323 / 7e-106 AT3G51650 671 / 0.0 unknown protein
Potri.016G133700
[exp]
306 / 1e-99 AT3G51650 706 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Lus10009098 pacid=23172417 polypeptide=Lus10009098 locus=Lus10009098.g ID=Lus10009098.BGIv1.0 annot-version=v1.0
ATGCTGCCTTGGTTAGTGATTCCTCTTATAGGATTGTGGGCATTGTCTCAACTCCTTCCCCCTGCTTTCCGGTTTGAGATTACCTCCCCAAGACTTGCTT
GTGTGTTTGTGCTTTTGATTACTCTCTTCTGGTACGAGATTTTGATGCCTCAGCTGTCTGCTTGGCGTGTGAGGAGGAATGCCCAGTTAAGGGAGAGGAA
GAGGTTTGAAGCTATTGAACTGCAGAAGCTCCGAAAAACTGCTACTAAGAGGTGTAGAAATTGCCTGACTCCTTATAAGGATCAGAATCCGGGAGGCGGC
AAGTTTATGTGTGCTTACTGTGGTCATATATCCAAGAGGCCAGTATTGGAACTGGCTGTACCTCCTGGATTAGGGATTGCAAACTCTGGGATTGTTAAGG
ACTTGGTTGGAAAGGGTGGAAAAATATTAAATGGCAAGGCATCATCTGATAATGGATGGGTTTGCAGTCAGGATTGGTTAGAGAATGGTGGTTGGGTTGG
TGTGAGAGAATGGTGGCTGGGTTGGGGGGTCTGTTGCTGGGAAGTCTAG
AA sequence
>Lus10009098 pacid=23172417 polypeptide=Lus10009098 locus=Lus10009098.g ID=Lus10009098.BGIv1.0 annot-version=v1.0
MLPWLVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLITLFWYEILMPQLSAWRVRRNAQLRERKRFEAIELQKLRKTATKRCRNCLTPYKDQNPGGG
KFMCAYCGHISKRPVLELAVPPGLGIANSGIVKDLVGKGGKILNGKASSDNGWVCSQDWLENGGWVGVREWWLGWGVCCWEV

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G51650 unknown protein Lus10009098
[exp]
0 1
AT4G28760 Protein of unknown function (D... Lus10011912
[exp]
3.9 0.9090
AT3G12640 RNA binding (RRM/RBD/RNP motif... Lus10037701
[exp]
5.7 0.9015
AT4G03430 EMB2770, STA1 STABILIZED 1, EMBRYO DEFECTIVE... Lus10039811
[exp]
11.2 0.8703
Lus10014954
[exp]
11.9 0.8978
AT1G09620 ATP binding;leucine-tRNA ligas... Lus10025653
[exp]
15.4 0.8481
AT4G28760 Protein of unknown function (D... Lus10022843
[exp]
17.5 0.8647
AT1G05055 ATGTF2H2, GTF2H... general transcription factor I... Lus10029294
[exp]
17.7 0.8616
AT4G32620 Enhancer of polycomb-like tran... Lus10021959
[exp]
18.8 0.8944
AT4G31160 DCAF1 DDB1-CUL4 associated factor 1 ... Lus10006377
[exp]
19.6 0.8940
AT5G07320 APC3 ATP/phosphate carrier 3, Mitoc... Lus10032523
[exp]
21.4 0.8620

Lus10009098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.