Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38370 288 / 7e-88 Plant protein of unknown function (DUF827) (.1) AT3G51730 223 / 1e-67 saposin B domain-containing protein (.1) AT5G01800 170 / 4e-48 saposin B domain-containing protein (.1) AT2G40480 156 / 2e-40 Plant protein of unknown function (DUF827) (.1) AT3G51720 149 / 1e-38 Plant protein of unknown function (DUF827) (.1) AT3G56270 105 / 1e-23 Plant protein of unknown function (DUF827) (.1) AT2G26570 88 / 1e-17 WEB1 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) AT5G42880 64 / 2e-10 Plant protein of unknown function (DUF827) (.1) AT4G33390 63 / 8e-10 Plant protein of unknown function (DUF827) (.1) AT1G45545 59 / 1e-08 Plant protein of unknown function (DUF827) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025249 [exp] 919 / 0 AT2G38370 327 / 5e-105 Plant protein of unknown function (DUF827) (.1) Lus10025248 [exp] 426 / 9e-145 AT3G51730 209 / 3e-68 saposin B domain-containing protein (.1) Lus10014162 [exp] 248 / 1e-75 AT5G01800 176 / 4e-54 saposin B domain-containing protein (.1) Lus10022750 [exp] 244 / 2e-74 AT5G01800 184 / 2e-57 saposin B domain-containing protein (.1) Lus10034211 [exp] 149 / 6e-38 AT2G40480 385 / 1e-128 Plant protein of unknown function (DUF827) (.1) Lus10029056 [exp] 74 / 2e-15 AT2G40480 124 / 1e-34 Plant protein of unknown function (DUF827) (.1) Lus10037354 [exp] 80 / 4e-15 AT2G26570 840 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10035778 [exp] 80 / 7e-15 AT2G26570 843 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Lus10029055 [exp] 59 / 6e-09 AT2G40480 226 / 6e-69 Plant protein of unknown function (DUF827) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133300 [exp] 546 / 0 AT2G38370 258 / 2e-78 Plant protein of unknown function (DUF827) (.1) Potri.006G107300 [exp] 244 / 5e-75 AT3G51730 182 / 9e-58 saposin B domain-containing protein (.1) Potri.016G133400 [exp] 239 / 3e-73 AT3G51730 178 / 5e-56 saposin B domain-containing protein (.1) Potri.019G049201 [exp] 216 / 1e-60 AT2G40480 358 / 3e-117 Plant protein of unknown function (DUF827) (.1) Potri.002G126700 [exp] 84 / 3e-16 AT2G26570 694 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1) Potri.014G029800 [exp] 77 / 3e-14 AT2G26570 669 / 0.0 WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1, Plant protein of unknown function (DUF827) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03489 [flax] [poplar] SapB_2 Saposin-like type B, region 2 PF05184 [flax] [poplar] SapB_1 Saposin-like type B, region 1 PF05701 [flax] [poplar] WEMBL Weak chloroplast movement under blue light
Representative CDS sequence Show only first row Show all	>Lus10009099 pacid=23172397 polypeptide=Lus10009099 locus=Lus10009099.g ID=Lus10009099.BGIv1.0 annot-version=v1.0 ATGGGTTCCGAGATCGGCGTCGGTGATTCTCCTCCTCCTTCTGCTTGGATCAACAAAGAAGAAGAGACTTCCAGAATCGAGGTCGACACCTCCGCGCCTT TCGAGTCCGTCAAGGAGGCCGTCACTCGATTCGGCGGTCTCGGCTACTGGAAACCTTCCAAGCTTTCCACCTCCGAGAATGAAATGGTGGAAGAAGGGGT GGAGGACATGACCAAAGTAGAGGAGCAAGCAGAGGAGCTGGAGAACGATCTGATCCTGAAAGAAAGGGAGACACTTGATGTCTTGAAAGAACTGGAAGCC ACCAAAACGATTGTTGAAGAGCTCAAACTGAAGCTGCAGAGGCAAGCTTCTGAAGTTAATGTCACACTTGGTACATCAGATGAAGAAGTATTACTTTTTG GAGATGTGGCTGAAAACAAAGGCGATGATCTTGAGGAAGCAGAAGACGAGGATATTAATGTGAATCCTGTACTGGGAATCGAAAATTTCCCACCTTCCTC CGCACCCGGTCTCATTCTGTTGGAACTTAAACAAGCAAAGTTCAACTTGACGAGGACTACCGGTGATCTTGCCAACATTCGATCTTCTGTTGAATTGCTG AACAAGAAGCTGGAGAAGGAAAGGGCTTCCCTTAAGAGGACACGCGAGAGGCTTACAACAAACTCGTCCAAGATGTCTTGCCTTGAGCAAGAGCTTAGCA AGACAAAGTTGAAGCTTCACGCTGCGAAAGGTGCTGAGATCAATGATGGTTCGGAGGAGAACAATGATGATCCATTGGATATATCCAAGGAGTTGCAGCG GCTGAGTTCCGAGGTGGAGCAGTTCAAGGTAATGGGAGATGCAGCAAGGAATGAAGTTTCTAGAGCCTTGTCTGAGATCGAACAGACGAGAACTAGGATA AAAACGGCCGAGATGAGGTTGGTTGCTGCTCGGAAGATGAAGCAAGCAGCTAGAGCAGCAGAAGCTGTTGCTCTTGCTGAGATCAAGGCTTTATCCAAGT CAAAAGAGGAGAGTTATTCTTTCTCGCCGGAGGGTGTAACCCTTACATATGAAGAGTACTCATCCCTAACCTGTAAGGCTCGTGAAGCTGAGCAAGTTTC CAAGACAAAGGTTGTGAACGCAATGGTACAAATTGAGGAAGCAAACGTTTCAAACATGGAAGTGTTGAAGAAAGTGGAGGAAGCTACTGAGGAAGTGAAA ACCAGTAAGGCTGCCTTGGAAGAAGCCTTGAGCAGAGTAGAGGCTGCAAACAAGGAGAAACTAGCAGTTGAAGAGGCTTTAAGGAAGTGGAGATCAGAGA ATGGTCAGAGGAAACGCCATGTCCATAACTCCACCAAGTTCAAGACCTCAACTCATTCCACAAACCCCCGGAGGGAGCAGCTATCTCGTCTCCGCGATGT GAATGGCACGAACCTGGCAACCGATGATGGAAAGGATCCTACTTTGAAGCCGACTTTGTCAATAGGGCAAATTCTAACCAGGAAGTTGCTCCTGCCTGAA GATTTTGAGATGGAGATGATGGCGGAGAAAGGTGGGATGAAAAGAAAAGTATCATTGGGTCAAATGTTGAGCAAAAAGAATGTTGGTGGTGAGATACAAG TTCCACCACTCCAAGGAAGGAAGGGTGAGAGTGAAGGGTCGTCTTCCTCGTTCACAAATGTATCAGGAAAGAGGAAGAAATTTGGGTTTGCTCGGTTCTC ATTGATGTTGGCAAAGCAAAGTAAGAAGAAGAAGAAGCCTAATCTGAATCTGAGGGTAAACATGGATATGAGAGTTGGCCTCTTTCTTCTCCTTGTCTTG TTGGGTTGTGCCTTCGGTTCTTCTTCCGCCAGGAAAATCTCAACTTTTGAGCTTCCCATCGTTGGGGCGTATGAAACATCAGATGTTACAGTGGAGATCG TTCGAGCTGAGGAAGTAGGAAAGAAGGATGAATTATGCACATTGTGCGAACAGTACAGTGCCCAGGCGCTCGAGTATCTTGCTAATAACAAGACTCAGAC TGAGATCATAGAAATCCTTCATCATAGCTGTTCACAAGTTGCCTCTTTTAAGAGAGAGTGCATTAGTTTGGTAGACTATTACGCACCTCTCTTCTTCTTA GAGGTTTCATCTATTCGCCCCGAAGAGTTCTGTCGCAAGATGAACCTTTGCCAGAAGGTTGTGGCCATTGCCTTGCAACTTAAAGAAGACACATGTGGAA TCTGCCACCAAACCATTGACGAAGTTATGTCCAAGTTGAAAGATCCCGACACTCAGCTGGAGATAATCGAATTGCTTTTGAAAGCCTGCAACAAAATCGA GAGTCGCAAGGCACAGTGCAAGAAGCTGGTGTTTGAGTACGGTCCAGTGATCCTTATCAACGCAGAACAATTTCTGGAGAAAACGGACATATGCAGCTTG TTACGTGCTTGCACCAGCACCAAACAAACATCAGCAGCAGCAATCGGTGTGGCTGAATCGTGA
AA sequence Show only first row Show all	>Lus10009099 pacid=23172397 polypeptide=Lus10009099 locus=Lus10009099.g ID=Lus10009099.BGIv1.0 annot-version=v1.0 MGSEIGVGDSPPPSAWINKEEETSRIEVDTSAPFESVKEAVTRFGGLGYWKPSKLSTSENEMVEEGVEDMTKVEEQAEELENDLILKERETLDVLKELEA TKTIVEELKLKLQRQASEVNVTLGTSDEEVLLFGDVAENKGDDLEEAEDEDINVNPVLGIENFPPSSAPGLILLELKQAKFNLTRTTGDLANIRSSVELL NKKLEKERASLKRTRERLTTNSSKMSCLEQELSKTKLKLHAAKGAEINDGSEENNDDPLDISKELQRLSSEVEQFKVMGDAARNEVSRALSEIEQTRTRI KTAEMRLVAARKMKQAARAAEAVALAEIKALSKSKEESYSFSPEGVTLTYEEYSSLTCKAREAEQVSKTKVVNAMVQIEEANVSNMEVLKKVEEATEEVK TSKAALEEALSRVEAANKEKLAVEEALRKWRSENGQRKRHVHNSTKFKTSTHSTNPRREQLSRLRDVNGTNLATDDGKDPTLKPTLSIGQILTRKLLLPE DFEMEMMAEKGGMKRKVSLGQMLSKKNVGGEIQVPPLQGRKGESEGSSSSFTNVSGKRKKFGFARFSLMLAKQSKKKKKPNLNLRVNMDMRVGLFLLLVL LGCAFGSSSARKISTFELPIVGAYETSDVTVEIVRAEEVGKKDELCTLCEQYSAQALEYLANNKTQTEIIEILHHSCSQVASFKRECISLVDYYAPLFFL EVSSIRPEEFCRKMNLCQKVVAIALQLKEDTCGICHQTIDEVMSKLKDPDTQLEIIELLLKACNKIESRKAQCKKLVFEYGPVILINAEQFLEKTDICSL LRACTSTKQTSAAAIGVAES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38370			Plant protein of unknown funct...		Lus10009099 [exp]	0	1
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Lus10040764 [exp]	2.0	0.9559
AT4G39870			TLD-domain containing nucleola...		Lus10041697 [exp]	3.0	0.9491
AT2G32070			Polynucleotidyl transferase, r...		Lus10017123 [exp]	4.0	0.9464
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10002484 [exp]	4.7	0.9499
AT1G44170		ALDH4, ALDH3H1	aldehyde dehydrogenase 4, alde...		Lus10042724 [exp]	5.3	0.9376
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10010695 [exp]	7.5	0.9438
AT5G27210			Protein of unknown function, t...		Lus10018984 [exp]	7.7	0.9165
AT1G78895			Reticulon family protein (.1)		Lus10033352 [exp]	8.5	0.9420
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10004810 [exp]	9.2	0.9444
AT3G06240			F-box family protein (.1)		Lus10014793 [exp]	9.5	0.9384

Compare expression of checked genes

Lus10009099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.