Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51650 599 / 0 unknown protein AT3G51640 593 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025247 [exp] 1327 / 0 AT3G51650 723 / 0.0 unknown protein Lus10025250 [exp] 1179 / 0 AT3G51650 686 / 0.0 unknown protein Lus10009097 [exp] 704 / 0 AT3G51650 360 / 2e-114 unknown protein Lus10009098 [exp] 338 / 4e-112 AT3G51650 294 / 3e-95 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G107500 [exp] 873 / 0 AT3G51650 671 / 0.0 unknown protein Potri.016G133700 [exp] 865 / 0 AT3G51650 706 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009100 pacid=23172399 polypeptide=Lus10009100 locus=Lus10009100.g ID=Lus10009100.BGIv1.0 annot-version=v1.0 ATGTGTACACTCTGTGTGATCCAGAAGTGGTCTCGTCGGATTGCTACGATGCTGCCTTGGTTAGTGATTCCTCTTATAGGGTTGTGGGCTTTGTCTCAAC TCCTTCCCCCTGCTTTCCGGTTCGAGATTACCTCCCCAAGACTTGCTTGTGTGTTTGTGCTTTTGATTACTCTCTTCTGGTACGAGATTTTGATGCCTCA ACTGTCTGCTTGGCGTGTGAGGAGGAATGCCCAGTTAAGAGAGAGGAAGAGGTTTGAAGCTATTGAACTGCAGAAGCTCCGAAAAACTGCTACTAAGAGG TGTAGAAATTGCCTGACTCCTTATAAGGATCAGAATCCGGGAGGCGGCAAGTTTATGTGTGCTTACTGTGGTCATATATCCAAGAGGCCAGTATTGGAAG TGGCTGTACCTCCTGGATTAGGGAGTCCAAATTCTGGGATTTGTAAAGACTTGGTTGGAAAGGGTGGAAAAATACTAAATGGAAAGGCATGGTCTGATAA TGGATGGGTTTGCAGTCAGGATTGGTTAGAGAATGGTGGTTGGGTTGGGGGGTCTGTTGCTGGGAAGTCTAGTTATTGGCAGAGAAGTGGCGGTGGCGGC CGTGGTGTATTTGTAGCAGATGATGACTGTTTGGAAGAGAACTCTTACTTGCGCTTTGTAAATTTTGGATGCAAACTACTGACTTCATTTTTCTTGAGCA TTAGGTGGCTTCTGAGAAAGATTTTTAGGATTAGTTCGTCAAAGGACAATGCTTCTTCCAATGCAGACCATAGGGGAGTCATGGCTAAAAGAGGAGAGAA TGGGATGAACCTTTCTGAGAGTAGAGTGGAGAAAGCTCGCAGGAAAGCTGAGGAGAAGAGGCAGGCTAGGTTAGAGAGGGAGCTTTTGGAGGAGGAAGAG AGAAAACAGCGGGAGGAGGTTGCTAGGTTAGTTGAGGAGCGCCGAAGGTTGAGGGATGAGAAAATGGAGGCTGAGAAAGACCGGAACAAGCTGTCATCAC CGACTAGCAAAGATCGTAAAAGTGAAGCAGAAAAGAAACGCCAGGAGAGAAGAAGAGATAAAGATAAGGGATCCAGTAAGAGTAACTCTGATGTGGAAGA GATGGAAAAACGTGCTGGGAAAGAAAGTGCAAGGAAAAAAGATGTTGGTAAGAAGAGTGATGTGGAGAAGAGGGAACAACAGAAGTTCAGTACTTCTATA CACAATTTTGGCCGTGGAAATGCTGGAACTAGGTACCTTGACCGGATGAAGGGAACGTTTTTATCTCCTTCAAGAGCTTTTAGCGGAAACGGTTTCTTTG GGCGTAACGTTAACAATCCTGCTGCTGCTACGAAAGAAGTGAAGTTCAATAGCTCTGCGGATCAACTTCACACTTCTGTCCAGAGGAGAGAGATATGTCC GCTTGGTCCGGTCGGGAAATCAAGTATCAATTCTGACGATAAAAATGCTAACCAACCTGTACCATCAGCACAGCAAAGGGTGGGACCTAAGAAGTCATGG CAGCAATTATTTACGCGCTCTTCGTCCTCAAGTACTAATGTCATTGGCCGACCGAATCCAAAACCTCCGGCAGAGTTGCAGAAGCCTCAGTTACCAGGAC AAACATCAATGATACAGTCATTTGATAATCCTATTATTTTTGGGCTGCCATCACCATTTTCTACCCCCATGTATCCTGATATGTCCAGCAGATCTAGTTT AGGTTTCTCAACTCCCATCGACTCCAGTGCTCTCCGGATTTCTGAAGAACTGGAGTGTTTTGAAGACCCTTGCTATGTTCCTGATCCCGTATCATTGCTT GGGCCTGTCTCAGAGTCCCTGGATAATTTCCAGCTGGACTTCGGAGCTGGTTTTCCATTAGATAGAACACAACCTCTAAAGAAGTCAGCTGGATCTCCTG AAGTGAGCAAGCCATCTCCAATCGAGTCTCCATTATCTCGTCGAATTTCTGATGAAAAGAACAACAACTGGTTCCCCACCACTCCCAGGACTCGAGAGGT GAATGCCCATTATGTTGATGATGTGCATAAAAATGAGACAGGGACATGGCAAATGTGGAAGAGTACTCCTCTTTGTCAAGATGGTCTTGGTTTGGTTGGG GGCTCAGGTAGCTGGCTTTTGCCACCAGAGAGAAGTATTTCGGCCGAAGAAGATATTTTTTCGCATCCTTCCTCTCAGAAGAATTTAACATCAATGTTTT TGACAGAGGACAAAGCTCTTTCAGGGAATCTCTCTCCTCAGAACTATCTTGGTAATGGCCACAATGGGGTGTTCAGTCCCGTCACTAGCTCGCATGACAA TGAACCATGGTTGCAGAATGCTTTTTTCCATCCACTTTCTGGCAGCGAAGGTCATCTCTTTGTCAAAACTGAGGAAGATAGTATTCAATAA
AA sequence Show only first row Show all	>Lus10009100 pacid=23172399 polypeptide=Lus10009100 locus=Lus10009100.g ID=Lus10009100.BGIv1.0 annot-version=v1.0 MCTLCVIQKWSRRIATMLPWLVIPLIGLWALSQLLPPAFRFEITSPRLACVFVLLITLFWYEILMPQLSAWRVRRNAQLRERKRFEAIELQKLRKTATKR CRNCLTPYKDQNPGGGKFMCAYCGHISKRPVLEVAVPPGLGSPNSGICKDLVGKGGKILNGKAWSDNGWVCSQDWLENGGWVGGSVAGKSSYWQRSGGGG RGVFVADDDCLEENSYLRFVNFGCKLLTSFFLSIRWLLRKIFRISSSKDNASSNADHRGVMAKRGENGMNLSESRVEKARRKAEEKRQARLERELLEEEE RKQREEVARLVEERRRLRDEKMEAEKDRNKLSSPTSKDRKSEAEKKRQERRRDKDKGSSKSNSDVEEMEKRAGKESARKKDVGKKSDVEKREQQKFSTSI HNFGRGNAGTRYLDRMKGTFLSPSRAFSGNGFFGRNVNNPAAATKEVKFNSSADQLHTSVQRREICPLGPVGKSSINSDDKNANQPVPSAQQRVGPKKSW QQLFTRSSSSSTNVIGRPNPKPPAELQKPQLPGQTSMIQSFDNPIIFGLPSPFSTPMYPDMSSRSSLGFSTPIDSSALRISEELECFEDPCYVPDPVSLL GPVSESLDNFQLDFGAGFPLDRTQPLKKSAGSPEVSKPSPIESPLSRRISDEKNNNWFPTTPRTREVNAHYVDDVHKNETGTWQMWKSTPLCQDGLGLVG GSGSWLLPPERSISAEEDIFSHPSSQKNLTSMFLTEDKALSGNLSPQNYLGNGHNGVFSPVTSSHDNEPWLQNAFFHPLSGSEGHLFVKTEEDSIQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G51650			unknown protein		Lus10009100 [exp]	0	1
AT4G10925			Nuclear transport factor 2 (NT...		Lus10023064 [exp]	1.0	0.8525
AT5G64210		AOX2	alternative oxidase 2 (.1)		Lus10020523 [exp]	3.5	0.8371
AT2G19260			RING/FYVE/PHD zinc finger supe...		Lus10015537 [exp]	4.0	0.7873
AT1G74900		OTP43	organelle transcript processin...		Lus10042307 [exp]	4.2	0.7870
AT3G22520			unknown protein		Lus10006124 [exp]	4.9	0.8168
AT1G18260		HRD3A, EBS5	EMS-mutagenized bri1 suppresso...		Lus10009046 [exp]	6.3	0.8090
AT5G57710			Double Clp-N motif-containing ...		Lus10015511 [exp]	6.6	0.7559
AT1G02290			unknown protein		Lus10028606 [exp]	6.7	0.8084
AT2G01060	GARP		myb-like HTH transcriptional r...		Lus10038734 [exp]	10.7	0.7974
AT3G06270			Protein phosphatase 2C family ...		Lus10034009 [exp]	11.6	0.7318

Compare expression of checked genes

Lus10009100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.