Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G30360 485 / 2e-170 PKS5, CIPK11, SnRK3.22, SIP4 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) AT5G01820 483 / 2e-169 PKS24, CIPK14, ATSR1, SnRK3.15, ATCIPK14 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) AT4G18700 461 / 2e-160 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT5G45810 436 / 2e-150 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT1G29230 431 / 6e-148 ATCIPK18, ATWL1, CIPK18, SnRK3.20 SNF1-RELATED PROTEIN KINASE 3.20, WPL4-LIKE 1, CBL-interacting protein kinase 18 (.1) AT2G34180 414 / 2e-141 ATWL2, CIPK13, SnRK3.7 SNF1-RELATED PROTEIN KINASE 3.7, WPL4-LIKE 2, CBL-interacting protein kinase 13 (.1) AT5G45820 412 / 2e-141 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT2G38490 404 / 2e-138 CIPK22, SnRK3.19 SNF1-RELATED PROTEIN KINASE 3.19, CBL-interacting protein kinase 22 (.1) AT4G30960 401 / 2e-137 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G25110 397 / 5e-135 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025245 [exp] 837 / 0 AT5G01820 504 / 1e-177 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Lus10022748 [exp] 582 / 0 AT2G30360 491 / 3e-173 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10009925 [exp] 495 / 2e-173 AT2G30360 553 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Lus10015275 [exp] 439 / 4e-151 AT4G18700 736 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Lus10042229 [exp] 412 / 1e-141 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10036280 [exp] 410 / 8e-141 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 410 / 9e-141 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10022749 [exp] 405 / 1e-138 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 404 / 3e-138 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G133900 [exp] 583 / 0 AT5G01820 490 / 2e-172 SNF1-RELATED PROTEIN KINASE 3.15, SOS2-like protein kinase 24, CBL-INTERACTING PROTEIN KINASE 14, serine/threonine protein kinase 1 (.1) Potri.013G155600 [exp] 522 / 0 AT2G30360 536 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.019G128100 [exp] 513 / 0 AT2G30360 531 / 0.0 SNF1-RELATED PROTEIN KINASE 3.22, PROTEIN KINASE SOS2-LIKE 5, CBL-INTERACTING PROTEIN KINASE 11, SOS3-interacting protein 4 (.1) Potri.011G067600 [exp] 450 / 3e-155 AT4G18700 720 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.004G058300 [exp] 441 / 1e-151 AT4G18700 735 / 0.0 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) Potri.016G133500 [exp] 424 / 5e-146 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G186200 [exp] 418 / 5e-144 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.018G108500 [exp] 415 / 8e-143 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G048800 [exp] 411 / 2e-141 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 409 / 2e-140 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [flax] [poplar] KA1-like PF03822 [flax] [poplar] NAF NAF domain CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009103 pacid=23172398 polypeptide=Lus10009103 locus=Lus10009103.g ID=Lus10009103.BGIv1.0 annot-version=v1.0 ATGGCGAGCGATTGGGGACCGGCGGTTGAATCATCCGGGGAGATTTCAACGGATTCTTACCTATTCGGAAAATACGAAATCGGGAAGCTGCTCGGATGCG GAGCCTTCGCCAAAGTATATCACTGCCGTAACGTACTGACAGGGCAGAGTGTAGCAATCAAGGCCGTGAGCAAAAACAAAGTCCAAAAGGGAGGGTTCAT GGCGCACATCAAGAGGGAGATTTCTATCATGCGCCGCCTCCACCACCCGAACGTCGTGCGCCTCTTCGAGGTCCTCGCCACCAAATCGAAGATCTACTTC GTGATGGAGTATGCCAAAGGCGGAGAGCTCTTCACCAAAATCGCCAAAGGCCGATTCAGTGAAGCCCTCAGTAGGAAGTACTTCCAGCAGCTGATTACCT CAATCGGTTACTGCCACGCCAGGGGCGTCTTCCACCGTGATTTGAAGCCCGAGAATCTCCTCCTCGACGAGAATTGGAATCTCAAGGTCTCCGATTTCGG GCTCAGCGCCGTCCACGAGCAGATACAGTCCGACGGCCTCCTTCACACCTTGTGTGGGACCCCTGCCTACGTGGCCCCCGAAATTCTCGCGAAGAAGGGC TACGACGGTGCCAAGGTGGACATCTGGTCCTGTGGTATCATCTTGTTCGTCCTTGTGGCCGGTTACCTTCCCTTCAACGACACAAACCTCATGGCGATGT ACAAGAAGATTTACAAAGGGGAATTCCGATGTCCGAAGTGGACTTCGCCGGAGCTCCGCCGCTTCCTCTTCCGCCTCCTGGATTCCAATCCTGATACGAG GATCACCGTCGACGAGATCTTAAGAGATCCTTGGTTCAAGTTGGATTACAAGGGGACGACGAGTTACCAGGTTGTCCATGATTTTGAATTCAAGAGCCGA ATGCTAGAAGACGACGACGACACCAGCCGAGAGCAGAGTTTGAACGCCTTCGACTTGATTTCTTTCTCGTCCGGGTTCGACCTGTCACCGATGTTTAACG AGTCCGACATATCCACCTGCGGCGAGAGGTTTATATCGGTGGAATCCCCGGAGAGAATTATGGAGAAAGTTGAGGAGGTGGCGAAGGAAGAGGAGGGAGT AGTTACAGTGACGGAAAGGTACCGTTCCGGGTTGAAGCTGGAAGGGCGGAACGGTAACTTCGTGATGTTGCTCGAGATTTACCGATTGACGGATAAATTG GTAGTGTTTGAGGTGAGGGAGAAGGAGGTAAATGTGGTTCCAGGTCAAGGAATCTGGAAACACAAGCTCCGGCCGCAGCTCCGGCAATTGGTTTACCAAT ACAAGGGTGCCTAA
AA sequence Show only first row Show all	>Lus10009103 pacid=23172398 polypeptide=Lus10009103 locus=Lus10009103.g ID=Lus10009103.BGIv1.0 annot-version=v1.0 MASDWGPAVESSGEISTDSYLFGKYEIGKLLGCGAFAKVYHCRNVLTGQSVAIKAVSKNKVQKGGFMAHIKREISIMRRLHHPNVVRLFEVLATKSKIYF VMEYAKGGELFTKIAKGRFSEALSRKYFQQLITSIGYCHARGVFHRDLKPENLLLDENWNLKVSDFGLSAVHEQIQSDGLLHTLCGTPAYVAPEILAKKG YDGAKVDIWSCGIILFVLVAGYLPFNDTNLMAMYKKIYKGEFRCPKWTSPELRRFLFRLLDSNPDTRITVDEILRDPWFKLDYKGTTSYQVVHDFEFKSR MLEDDDDTSREQSLNAFDLISFSSGFDLSPMFNESDISTCGERFISVESPERIMEKVEEVAKEEEGVVTVTERYRSGLKLEGRNGNFVMLLEIYRLTDKL VVFEVREKEVNVVPGQGIWKHKLRPQLRQLVYQYKGA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G30360		PKS5, CIPK11, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10009103 [exp]	0	1
AT1G67410			Exostosin family protein (.1)		Lus10015791 [exp]	2.8	0.8813
AT1G24330			ARM repeat superfamily protein...		Lus10037005 [exp]	6.3	0.8509
AT2G36330			Uncharacterised protein family...		Lus10032148 [exp]	8.3	0.8679
AT3G15350			Core-2/I-branching beta-1,6-N-...		Lus10043324 [exp]	8.7	0.8761
AT5G10180		SULTR2;1, AST68	sulfate transporter 2;1, ARABI...		Lus10022502 [exp]	10.1	0.8643
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	10.5	0.8433
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Lus10016493 [exp]	12.2	0.8149
AT3G18750		ZIK5, WNK6, ATW...	ARABIDOPSIS THALIANA WITH NO K...		Lus10030229 [exp]	12.3	0.8288
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Lus10015370 [exp]	13.3	0.8652
AT1G02180			ferredoxin-related (.1)		Lus10038068 [exp]	14.7	0.8646

Compare expression of checked genes

Lus10009103 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.