Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01300 114 / 9e-33 unknown protein AT1G15010 91 / 1e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004069 [exp] 211 / 4e-71 AT2G01300 114 / 2e-33 unknown protein Lus10002277 [exp] 73 / 1e-16 AT2G01300 95 / 3e-25 unknown protein Lus10004062 [exp] 72 / 4e-16 AT2G01300 95 / 4e-25 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G127800 [exp] 96 / 1e-25 AT2G01300 150 / 4e-47 unknown protein Potri.004G093100 [exp] 91 / 6e-24 AT2G01300 113 / 7e-33 unknown protein Potri.004G093000 [exp] 90 / 2e-23 AT2G01300 107 / 2e-30 unknown protein Potri.004G092800 [exp] 86 / 1e-21 AT2G01300 122 / 2e-36 unknown protein Potri.010G115100 [exp] 72 / 2e-16 AT2G01300 102 / 3e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009104 pacid=23150054 polypeptide=Lus10009104 locus=Lus10009104.g ID=Lus10009104.BGIv1.0 annot-version=v1.0 ATGAAATCCACCGCCCTTTGCACTTCCTTATCCATTCCGTCACTCTCGCCACGTCGATCCGCAATCTCCGCCATCAATCGGCCAGTAGTAGCGGCAGCTG CCATTTCCCCGAGAAGGAGGCGCCAGACGATGGCGATCTCCGCCGCCATTAATAGAAGAGACGACGACACCTCGAATAAGCCATCTTACGGCGGCGGCGA GGGGCACGTGGTGGACGAAGGGATGATCGTGCTGAGGAAGCGGATCGGGGAGATGAAGATGGCGGAGCAGAGCTACGAGCCGCCGGAGGAGTGGGCCGAG TGGGAGAAGCAAAACTACGCCGTTTACGGGGATCTGGTGTGCAAGTCGTTGGGAGTGATGCAGAGGTCGTTGATGAGTACCAGGCCAACGTTCGCTCTCG GCGCGTTGGTGCTACTCGCTGCCAGCGTGCCCGTGTCGACTTATGCGGTAGCGTCGAGAATCGCGGAGGCTGCGGATGGGGTTTTCTCTTCCCTCCATCT TCTGGGTTAA
AA sequence Show only first row Show all	>Lus10009104 pacid=23150054 polypeptide=Lus10009104 locus=Lus10009104.g ID=Lus10009104.BGIv1.0 annot-version=v1.0 MKSTALCTSLSIPSLSPRRSAISAINRPVVAAAAISPRRRRQTMAISAAINRRDDDTSNKPSYGGGEGHVVDEGMIVLRKRIGEMKMAEQSYEPPEEWAE WEKQNYAVYGDLVCKSLGVMQRSLMSTRPTFALGALVLLAASVPVSTYAVASRIAEAADGVFSSLHLLG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01300			unknown protein		Lus10009104 [exp]	0	1
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Lus10009270 [exp]	3.2	0.9099
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	4.9	0.8940
AT1G74450			Protein of unknown function (D...		Lus10042809 [exp]	5.3	0.8955
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10009127 [exp]	8.1	0.8451
AT5G01710			methyltransferases (.1)		Lus10022682 [exp]	9.5	0.8748
AT5G63130			Octicosapeptide/Phox/Bem1p fam...		Lus10017947 [exp]	11.8	0.8843
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	12.6	0.8703
AT3G57450			unknown protein		Lus10031071 [exp]	13.2	0.8779
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Lus10009271 [exp]	13.6	0.8798
AT3G20310	AP2_ERF	ATERF7, ATERF-7	ethylene response factor 7 (.1...		Lus10043182 [exp]	14.0	0.8882

Compare expression of checked genes

Lus10009104 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.