Plant FIBer expression Database

Lus10009105 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38060 152 / 2e-48 unknown protein
AT1G65000 51 / 3e-09 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004070
[exp]
218 / 3e-74 AT5G38060 164 / 5e-53 unknown protein
Lus10026159
[exp]
44 / 3e-06 AT1G65000 119 / 2e-36 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G122500
[exp]
156 / 5e-50 AT5G38060 162 / 2e-52 unknown protein
Potri.013G078866
[exp]
45 / 1e-06 AT1G65000 118 / 2e-36 unknown protein
PFAM info
Representative CDS sequence
>Lus10009105 pacid=23150072 polypeptide=Lus10009105 locus=Lus10009105.g ID=Lus10009105.BGIv1.0 annot-version=v1.0
ATGGAGAAAATTGCTCTCTCTACGAATTCGCTCTGTCTGCCTTCTCACCGGAGAATTGCATCGTCGTCGGCGAAGGGTCTTCAGCTGTGCTTCTGGAGAT
GCAGTAATCCGATGCTCAATGTTGGATCACCGAGAAGTCGTCAGGTAGTGATTCAGAGTTCTTCATCCCCTGAAAGCAATACTAAAAATCTGAGAACTTG
TAAGAGCTGTAAAACCCCGTTTGATCCAGTTCTCAATCATCCTCGTGCTTGCCGATTCCACATCGCCCATTACGGAGGAGAGACGAAGAGGAAGTTTGAG
AGCGTATACAGTGGAGGCACCATGAATACTCCAGACTCAGGCAGAGTTCTCCAGTACTGGCATTGTTGTGGATCAGAAGACCCCATTCATCCTGGCTGCA
CTTCCGCTCCGCACCAAACTTATGATGATTGA
AA sequence
>Lus10009105 pacid=23150072 polypeptide=Lus10009105 locus=Lus10009105.g ID=Lus10009105.BGIv1.0 annot-version=v1.0
MEKIALSTNSLCLPSHRRIASSSAKGLQLCFWRCSNPMLNVGSPRSRQVVIQSSSSPESNTKNLRTCKSCKTPFDPVLNHPRACRFHIAHYGGETKRKFE
SVYSGGTMNTPDSGRVLQYWHCCGSEDPIHPGCTSAPHQTYDD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38060 unknown protein Lus10009105
[exp]
0 1
AT5G58110 chaperone binding;ATPase activ... Lus10040580
[exp]
9.2 0.8162
AT5G51780 bHLH bHLH036 basic helix-loop-helix (bHLH) ... Lus10031677
[exp]
10.9 0.8279
AT1G05870 Protein of unknown function (D... Lus10025562
[exp]
11.8 0.7994
AT2G37240 Thioredoxin superfamily protei... Lus10029111
[exp]
13.7 0.8251
AT5G20050 Protein kinase superfamily pro... Lus10033032
[exp]
16.0 0.7253
AT5G27930 Protein phosphatase 2C family ... Lus10031475
[exp]
16.1 0.8284
AT3G12620 Protein phosphatase 2C family ... Lus10014024
[exp]
18.3 0.6900
AT1G70780 unknown protein Lus10031920
[exp]
20.0 0.7896
AT2G41475 Embryo-specific protein 3, (AT... Lus10019416
[exp]
21.2 0.7796
AT1G04240 AUX_IAA IAA3, SHY2 SHORT HYPOCOTYL 2, indole-3-ac... Lus10039413
[exp]
24.7 0.7640

Lus10009105 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.