Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71080 174 / 8e-52 RNA polymerase II transcription elongation factor (.1) AT5G38050 149 / 5e-43 RNA polymerase II transcription elongation factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004071 [exp] 235 / 4e-78 AT1G71080 177 / 9e-56 RNA polymerase II transcription elongation factor (.1) Lus10004072 [exp] 187 / 7e-59 AT5G38050 58 / 3e-10 RNA polymerase II transcription elongation factor (.1) Lus10042948 [exp] 180 / 8e-54 AT1G71080 281 / 7e-93 RNA polymerase II transcription elongation factor (.1) Lus10032448 [exp] 177 / 5e-53 AT1G71080 280 / 5e-93 RNA polymerase II transcription elongation factor (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G092200 [exp] 215 / 8e-68 AT1G71080 194 / 2e-59 RNA polymerase II transcription elongation factor (.1) Potri.010G114900 [exp] 201 / 1e-62 AT1G71080 286 / 1e-95 RNA polymerase II transcription elongation factor (.1) Potri.008G127900 [exp] 191 / 9e-59 AT1G71080 285 / 1e-95 RNA polymerase II transcription elongation factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09816 [flax] [poplar] EAF RNA polymerase II transcription elongation factor
Representative CDS sequence Show only first row Show all	>Lus10009106 pacid=23150015 polypeptide=Lus10009106 locus=Lus10009106.g ID=Lus10009106.BGIv1.0 annot-version=v1.0 ATGGCGAATATCAACAACGAAGAACCCAGCACTGCTCCACACCCTGATCGCTGGTACGATCTCACCCTAGGCCCATCCTACACTGATCACTCAAAGTTCT ATACTTTACGCTATGATTTCAAGCCGGCGTCGATCGATAAGAGCGAGCCAGGAATGCTCCAGAAGGACAGCAACAAGAGGGTAATGGTGGAGTACAACAA CAACCAACCAGGGAAACCAAAGCTCGTCTTTGAAGGTGTGAGTGAGGATTACAAAGACAACGACGCCGTTCTCTTCTTCGACGGCCGGTCCTTTCGCCTT GAACGCCTCCACCGTGCCGTGAAGCGCCTGAGACATGTCCGGCTGCCGGGAGATCCTTTAGCAGCTGCCACGGTGGCTACTACTACTCCTCCTCCTCCAC TTGCTGCTGCTGATAAAGGAACAAAATTCCAAGGGGCTGATCAACATGTACCGGTGGTTCAGATGGAACAACATACAATCACCGAAGAAGAGAGGAATGT GATTCCTCAAAATCCAGCAACTTCGTCATCGTCTCCAGAAGCGAAGAACTACGAAGCTGAAGAGAAGGAAATGGACACGACAGCTGGCGGAGGATCGGAG GAAAGCGTGGACATACTCAGTGTTGATGATGAAGATGATGGGGTTGAAACAGCAGGCAACAGAAACAACAGCGGGAGCGGAGGAAGGGTACTTGACATCG ACATAAACGTGCCGCACCAAGCTGAAATGGAAGATGAGAATGCTGAAGTGGATATTAACGACGATGATGATGTCGGGGAGGAAGGAAAGGGTCCTAATGC AGCTGAAGCCCTCAAGGCTCAGGTGGGTGCAGCAGAGGAGGACGGTGAATCTACAAGCTCCGGTACGAATAGTGGCAGCGACAGTAGCAGGAGTGGAGCA GGGACCAGTAGCAGCAGTAGTGGTACTGACACTACCAGTGCTGGCGACTCCTCGTCTGGCTGA
AA sequence Show only first row Show all	>Lus10009106 pacid=23150015 polypeptide=Lus10009106 locus=Lus10009106.g ID=Lus10009106.BGIv1.0 annot-version=v1.0 MANINNEEPSTAPHPDRWYDLTLGPSYTDHSKFYTLRYDFKPASIDKSEPGMLQKDSNKRVMVEYNNNQPGKPKLVFEGVSEDYKDNDAVLFFDGRSFRL ERLHRAVKRLRHVRLPGDPLAAATVATTTPPPPLAAADKGTKFQGADQHVPVVQMEQHTITEEERNVIPQNPATSSSSPEAKNYEAEEKEMDTTAGGGSE ESVDILSVDDEDDGVETAGNRNNSGSGGRVLDIDINVPHQAEMEDENAEVDINDDDDVGEEGKGPNAAEALKAQVGAAEEDGESTSSGTNSGSDSSRSGA GTSSSSSGTDTTSAGDSSSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38050			RNA polymerase II transcriptio...		Lus10009106 [exp]	0	1
AT2G36730			Pentatricopeptide repeat (PPR)...		Lus10040171 [exp]	1.4	0.7750
AT5G39250			F-box family protein (.1)		Lus10032969 [exp]	7.6	0.7888
AT3G48410			alpha/beta-Hydrolases superfam...		Lus10017051 [exp]	10.6	0.7331
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Lus10001697 [exp]	11.6	0.7457
AT2G15980			Tetratricopeptide repeat (TPR)...		Lus10020712 [exp]	12.5	0.7352
AT1G51200			A20/AN1-like zinc finger famil...		Lus10031262 [exp]	21.7	0.7453
AT3G20500		ATPAP18, PAP18	purple acid phosphatase 18 (.1...		Lus10019625 [exp]	23.0	0.7281
AT3G05670			RING/U-box protein (.1)		Lus10000086 [exp]	23.8	0.6964
AT4G34630			unknown protein		Lus10028793 [exp]	25.3	0.7290
AT1G18070			Translation elongation factor ...		Lus10009038 [exp]	26.1	0.6659

Compare expression of checked genes

Lus10009106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.