Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G57670 104 / 2e-26 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT5G36930 101 / 7e-25 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT3G44480 101 / 1e-24 COG1, RPP10, RPP1 recognition of peronospora parasitica 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT3G44630 100 / 2e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT4G16900 100 / 2e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 99 / 5e-24 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G16950 99 / 5e-24 RPP5 RECOGNITION OF PERONOSPORA PARASITICA 5, Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G19510 98 / 2e-23 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT2G32140 96 / 3e-23 transmembrane receptors (.1) AT5G45060 96 / 7e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004075 [exp] 182 / 4e-53 AT4G12010 348 / 3e-102 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 179 / 1e-51 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10012246 [exp] 174 / 2e-50 AT4G12010 396 / 9e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10009107 [exp] 168 / 6e-48 AT4G12010 347 / 4e-101 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10042777 [exp] 154 / 5e-47 AT3G44630 136 / 2e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) Lus10007030 [exp] 160 / 7e-46 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 161 / 1e-45 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017419 [exp] 157 / 5e-45 AT4G12010 272 / 9e-80 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017418 [exp] 156 / 6e-44 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G069866 [exp] 114 / 1e-31 AT4G12010 179 / 4e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G069733 [exp] 112 / 2e-30 AT2G20142 147 / 1e-42 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.019G070700 [exp] 116 / 5e-30 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G095932 [exp] 114 / 1e-29 AT4G11170 294 / 5e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G069600 [exp] 114 / 3e-29 AT5G17680 647 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098800 [exp] 112 / 3e-29 AT4G16860 255 / 3e-75 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G069500 [exp] 114 / 5e-29 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098600 [exp] 107 / 5e-29 AT2G20142 138 / 4e-40 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.019G097300 [exp] 112 / 7e-29 AT4G16860 272 / 8e-81 recognition of peronospora parasitica 4, Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G070436 [exp] 106 / 8e-29 AT2G20142 160 / 7e-49 Toll-Interleukin-Resistance (TIR) domain family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10009108 pacid=23150069 polypeptide=Lus10009108 locus=Lus10009108.g ID=Lus10009108.BGIv1.0 annot-version=v1.0 ATGGCTTCCGCGTCATCCTCTTCCCATTCTTCCGGGACATGGGAATACGAAGTATTTGTGTGTTTCCGGGGCGGAATGCGGGAGGGTTTTACCAAAGACG TTGTGGACGCTTTGACCGAAAAGAATATCAAAACCTTCATGGACACCATGCTTAAGAAAACAGAGAGCATCGCAGAGCTGGTGTCGATCCTGAAAGACCC GCCAATTTCGGTGGTGATTCTCTCCCCCGGATTCGCCGAGTCCCCGTGGTGCCTTGACGAGGTGCATGCCATAGCCAACCGCGTGGAAAATGATGGGCAC AGGGTGTTACCGGTTTTCTACAAGGTGGATCCATCAGATGTCACGGATGACTCCGGTAGCTTCGCTGCAGCAATCGATCATCTTGAAAGACACAGCTTGG ATCAGAAGACGACATGGAGGGTCGCACTTAAAGATGTTGCTGATCAGGCTGGCCTCTGCTTCCCGTCTGATGAATTCAGGGGGGAACATAAGTTGATCAA AGCTATCGTTGGCAATGCGAACGAGTTGCTAGAAGAAATGGCAGAAAGCCTTGATGTATCGACAACGACTGGGTCGGAATGGATTCACGAGTTGAAGAAA TTAAACAGTTGCCAGAGATGA
AA sequence Show only first row Show all	>Lus10009108 pacid=23150069 polypeptide=Lus10009108 locus=Lus10009108.g ID=Lus10009108.BGIv1.0 annot-version=v1.0 MASASSSSHSSGTWEYEVFVCFRGGMREGFTKDVVDALTEKNIKTFMDTMLKKTESIAELVSILKDPPISVVILSPGFAESPWCLDEVHAIANRVENDGH RVLPVFYKVDPSDVTDDSGSFAAAIDHLERHSLDQKTTWRVALKDVADQAGLCFPSDEFRGEHKLIKAIVGNANELLEEMAESLDVSTTTGSEWIHELKK LNSCQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11170			Disease resistance protein (TI...		Lus10009108 [exp]	0	1
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	35.5	0.7682
					Lus10013906 [exp]	40.6	0.7434
AT2G30130	AS2	PCK1, LBD12, AS...	PEACOCK 1, Lateral organ bound...		Lus10005284 [exp]	49.8	0.6974
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031234 [exp]	198.9	0.7063

Compare expression of checked genes

Lus10009108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.