Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23200 498 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 466 / 2e-160 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 447 / 5e-153 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 436 / 1e-148 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 429 / 3e-145 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT5G51490 423 / 2e-143 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G33220 419 / 6e-142 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT3G49220 420 / 2e-141 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 409 / 3e-137 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 404 / 1e-135 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006103 [exp] 493 / 6e-172 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 493 / 1e-170 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 475 / 1e-163 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028536 [exp] 445 / 8e-157 AT3G60730 322 / 6e-109 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 448 / 1e-153 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 436 / 3e-147 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 428 / 3e-145 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015877 [exp] 412 / 2e-139 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 409 / 7e-138 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G109400 [exp] 582 / 0 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 491 / 1e-170 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 486 / 2e-168 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 481 / 2e-166 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 480 / 6e-166 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 457 / 3e-157 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 441 / 4e-150 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 436 / 1e-147 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 433 / 2e-146 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 427 / 1e-144 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF01095 [flax] [poplar] Pectinesterase Pectinesterase CL0268 [flax] [poplar] PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10009110 pacid=23150012 polypeptide=Lus10009110 locus=Lus10009110.g ID=Lus10009110.BGIv1.0 annot-version=v1.0 ATGGCCATCGGCCAATCAGCGGCCGACACGCAAGCATCAGACCTTCCACGTCAGTCTTCGATCAAGGAGACCATAAGGCATGCCATGCAGGTTCGCCAGC AGCTGATGATGTCATCATCCCTCAGCTCGAACTCCAAGATTCATTCTTCTTCCCTTGTTGTTGATCAAGATCGTGAGGATCCGCTTCGAATCGCGGCTGC CAAGTCAGCAATGGTTGACTGTGCTGAGCTGTACGATGACACGCTGGACCACCTCAATCTCTCGCTGGGGTCCACAGTGCCGTCAGACACTGTGACGTGG CTCAGCGCAGCCGTTGCCAATAAGGAGACCTGCCTGAACGGCTTCCGCGACCTCAACGTCACCTCCTCCCCGGCGTCATCATCGTTGTTGCCACGTGTCA TGTCCCAGTTCTCCCAGTCGCTTAGCAATGCGCTGGCGGTTAATAGTCAGGCGGCGGCGGGAGATGGCGGTGGGAGGAGGAAGCTGTTGTCAACGGCGGC AGAGGAGGGAGAAGGGCGAAGGTTTCCGTCGTGGGTGGCGGACGGCGATAGGAAGCTGTTGGAGGAGTTGGAGGGGAGTGGTAGGCCTGAGGCGGAGCAT ATAGTGGTGGCCCAAGATGGAACGGGGCATTATGGGACCATATCGGAGGCGGTGGCGGCGTCGGTTAAGGTTAGGAAGAATGCGGCGGCGATGGGGGGGA AGAGGTTTGTGATATATGTGAAGAAGGGAGTTTACAGAGAGAGCGTGGAGATTAAGAAATCGATGAAGAACGTTATGATGATCGGAGATGGGATCGATGA AACGGTGGTGTCTAATAGTAACAGCGTCCGTGGTGGCTTCACCACTTACCGCTCCGCAACTTTTGCTGTATCAGGGGCAGGGTTCATAGCCAAGGACATG ACATTCGAGAACACCGCCGAACCACAGAACCACCAAGCGGTTGCGCTCCGGTCGAGTTCAGACCTGTCGGTGTTTTACAGGTGTAGCTTCAAGGGCTACC AAGACACCTTATACGTCCACTCCCAACGCCAGTTCTACCGCGACTGTGACATTTACGGCACCGTTGACTTCATCTTCGGCGACGCCTCGGTCGTCCTTCA GAGCTGCAACATATACGTTAGGAGACCCATGAGTCACCAGAAGAACACCGTCACCGCTCAGGGTAGGACCGACCCCAATGAGAACACTGGCATCGTCATT CAAAGTTCCAGGATCACGGAAGCTGCTGACCTGGCACAAGTGCAGGGGTCCTTCGAGACATATCTAGGGAGGCCATGGAAGCAGTACTCGAGGACACTGG TGATAAAGAGCGACGTCGACGGCTTTATTAATCCCGCCGGATGGTTGCCGTGGAACGGTGAGTTTGCGCTGAGGACACTTTACTATGGAGAGTACATGAA TAGCGGGATCGGAGGGAGGACTGAGAGGAGAGTTTCGTGGCCTGGGTTTCACGTGATTAGAAGCGCTACCGAGGCCGGAAAGTTCACCGTCGGGAATTTC CTGAACGGCGATGCTTGGATTCCGAGTAGCGGAGTGCCGTATGCCTCCGGTTTGTAA
AA sequence Show only first row Show all	>Lus10009110 pacid=23150012 polypeptide=Lus10009110 locus=Lus10009110.g ID=Lus10009110.BGIv1.0 annot-version=v1.0 MAIGQSAADTQASDLPRQSSIKETIRHAMQVRQQLMMSSSLSSNSKIHSSSLVVDQDREDPLRIAAAKSAMVDCAELYDDTLDHLNLSLGSTVPSDTVTW LSAAVANKETCLNGFRDLNVTSSPASSSLLPRVMSQFSQSLSNALAVNSQAAAGDGGGRRKLLSTAAEEGEGRRFPSWVADGDRKLLEELEGSGRPEAEH IVVAQDGTGHYGTISEAVAASVKVRKNAAAMGGKRFVIYVKKGVYRESVEIKKSMKNVMMIGDGIDETVVSNSNSVRGGFTTYRSATFAVSGAGFIAKDM TFENTAEPQNHQAVALRSSSDLSVFYRCSFKGYQDTLYVHSQRQFYRDCDIYGTVDFIFGDASVVLQSCNIYVRRPMSHQKNTVTAQGRTDPNENTGIVI QSSRITEAADLAQVQGSFETYLGRPWKQYSRTLVIKSDVDGFINPAGWLPWNGEFALRTLYYGEYMNSGIGGRTERRVSWPGFHVIRSATEAGKFTVGNF LNGDAWIPSSGVPYASGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G23200			Plant invertase/pectin methyle...		Lus10009110 [exp]	0	1
AT1G24140			Matrixin family protein (.1)		Lus10005605 [exp]	6.0	0.8436
AT3G04120		GAPC1, GAPC-1, ...	glyceraldehyde-3-phosphate deh...		Lus10032071 [exp]	7.3	0.7839
AT3G57260		AtPR2, PR-2, PR...	PATHOGENESIS-RELATED PROTEIN 2...		Lus10027860 [exp]	8.4	0.8394
AT1G63270		ABCI1, ATNAP10	ATP-binding cassette I1, non-i...		Lus10040034 [exp]	9.4	0.7345
AT5G10770			Eukaryotic aspartyl protease f...		Lus10020099 [exp]	11.1	0.8284
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	11.5	0.8246
AT1G24140			Matrixin family protein (.1)		Lus10035221 [exp]	13.2	0.8194
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10020131 [exp]	16.8	0.7319
AT1G24140			Matrixin family protein (.1)		Lus10039464 [exp]	17.3	0.8142
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	17.3	0.8179

Compare expression of checked genes

Lus10009110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.