Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13700 259 / 4e-85 ATPAP23, PAP23 purple acid phosphatase 23 (.1) AT3G07130 202 / 2e-62 ATPAP15, PAP15 purple acid phosphatase 15 (.1) AT2G32770 151 / 6e-43 PAP13, ATPAP13 purple acid phosphatase 13 (.1.2.3) AT2G27190 76 / 6e-16 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT5G34850 73 / 6e-15 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT2G16430 71 / 3e-14 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT1G56360 65 / 4e-12 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT3G52810 64 / 1e-11 ATPAP21, PAP21 purple acid phosphatase 21 (.1) AT3G52820 61 / 7e-11 ATPAP22, PAP22 purple acid phosphatase 22 (.1) AT4G36350 61 / 9e-11 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028533 [exp] 393 / 8e-136 AT4G13700 696 / 0.0 purple acid phosphatase 23 (.1) Lus10011847 [exp] 216 / 2e-67 AT3G07130 830 / 0.0 purple acid phosphatase 15 (.1) Lus10022786 [exp] 213 / 5e-66 AT3G07130 828 / 0.0 purple acid phosphatase 15 (.1) Lus10016667 [exp] 211 / 8e-65 AT3G07130 788 / 0.0 purple acid phosphatase 15 (.1) Lus10007119 [exp] 171 / 8e-52 AT3G07130 376 / 1e-127 purple acid phosphatase 15 (.1) Lus10016665 [exp] 171 / 2e-50 AT3G07130 672 / 0.0 purple acid phosphatase 15 (.1) Lus10011753 [exp] 85 / 6e-20 AT3G16970 90 / 1e-22 Plant self-incompatibility protein S1 family (.1) Lus10027710 [exp] 81 / 1e-17 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10039978 [exp] 81 / 2e-17 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G176000 [exp] 282 / 1e-92 AT4G13700 739 / 0.0 purple acid phosphatase 23 (.1) Potri.002G243900 [exp] 205 / 4e-63 AT3G07130 805 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055900 [exp] 204 / 6e-63 AT3G07130 816 / 0.0 purple acid phosphatase 15 (.1) Potri.017G055800 [exp] 192 / 3e-58 AT3G07130 677 / 0.0 purple acid phosphatase 15 (.1) Potri.018G123700 [exp] 86 / 3e-19 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.006G063700 [exp] 81 / 1e-17 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.009G121200 [exp] 74 / 4e-15 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 72 / 1e-14 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 71 / 3e-14 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.018G024800 [exp] 71 / 5e-14 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009113 pacid=23150024 polypeptide=Lus10009113 locus=Lus10009113.g ID=Lus10009113.BGIv1.0 annot-version=v1.0 ATGGATTGGCGGGAAATGGCGGCCGTTTCTCTGCTTGTGATGGAGATTGTGGTCTCCCATACTTGGGCTATACCAACAACTCTTGATGGTCCCTTCCAGC CATTCACTCGCAGCTTTGATTCTTCTTTACGCAGAGGCAGCGACGACTTGCCCATGGATCACCCCAGGCTCATCAGAAATGTCAACGGCAATTTGCCTGA GCAGATTGCTGTTGCTGCTTCTTTTCCCCCTACTTCAATCTGGGTATCTTGGCTCACCGGTGAAGCGAAGATGGGTAGAAATGTGATTCCTCTGGATCCA GCTTCTGTGGGTAGTGAGTTGTATCCCTTTGAGGGCCTCTTGAATTACACCTCTCCCATCATCCACCATGTTAGAATTCATGGTCTCGAACTGGGGACAA GATATTACTACAAATGTGGGGACAGTTCCATAACAGCTATGAGCGACGAGCTAGTCTTTGAAACCATGCCATTGTCTGGTCCAGATTCATATCCTGTTCG AGTAGCAGTGGTTAGAGACCTCGGTCTCACAACAAACTCTACATCGACTATAGACCATTTGAGGATGAATGAACCGTGGCTAATCTTAATGGTTGGAGAT TTGACTTATGCAAATAAGTATCTCACAACCGGCGGGAAAGGAGCTTTGTGTGTTCCCTAA
AA sequence Show only first row Show all	>Lus10009113 pacid=23150024 polypeptide=Lus10009113 locus=Lus10009113.g ID=Lus10009113.BGIv1.0 annot-version=v1.0 MDWREMAAVSLLVMEIVVSHTWAIPTTLDGPFQPFTRSFDSSLRRGSDDLPMDHPRLIRNVNGNLPEQIAVAASFPPTSIWVSWLTGEAKMGRNVIPLDP ASVGSELYPFEGLLNYTSPIIHHVRIHGLELGTRYYYKCGDSSITAMSDELVFETMPLSGPDSYPVRVAVVRDLGLTTNSTSTIDHLRMNEPWLILMVGD LTYANKYLTTGGKGALCVP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13700		ATPAP23, PAP23	purple acid phosphatase 23 (.1...		Lus10009113 [exp]	0	1
AT3G12620			Protein phosphatase 2C family ...		Lus10040346 [exp]	15.0	0.6754
AT1G27180			disease resistance protein (TI...		Lus10023093 [exp]	19.7	0.6628
AT1G32400		TOM2A	tobamovirus multiplication 2A ...		Lus10040108 [exp]	31.0	0.6551
AT3G57170			N-acetylglucosaminyl transfera...		Lus10003248 [exp]	33.0	0.6589
AT5G06810			Mitochondrial transcription te...		Lus10018548 [exp]	43.3	0.6040
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	43.7	0.6536
AT3G43790		ZIFL2	zinc induced facilitator-like ...		Lus10041286 [exp]	45.2	0.6089
AT1G18060			unknown protein		Lus10012667 [exp]	47.9	0.6435
AT2G32760			unknown protein		Lus10022575 [exp]	57.4	0.6288
AT2G15230		ATLIP1	lipase 1 (.1)		Lus10002809 [exp]	60.9	0.6286

Compare expression of checked genes

Lus10009113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.