Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47510 882 / 0 FUM1 fumarase 1 (.1.2) AT5G50950 871 / 0 FUM2 FUMARASE 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028532 [exp] 1009 / 0 AT2G47510 881 / 0.0 fumarase 1 (.1.2) Lus10032296 [exp] 862 / 0 AT5G50950 849 / 0.0 FUMARASE 2 (.1.2.3) Lus10002606 [exp] 51 / 2e-06 AT5G10920 769 / 0.0 L-Aspartase-like family protein (.1) Lus10032846 [exp] 49 / 6e-06 AT5G10920 753 / 0.0 L-Aspartase-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201300 [exp] 930 / 0 AT2G47510 877 / 0.0 fumarase 1 (.1.2) Potri.002G106200 [exp] 45 / 0.0001 AT5G10920 787 / 0.0 L-Aspartase-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10415 [flax] [poplar] FumaraseC_C Fumarase C C-terminus PF00206 [flax] [poplar] Lyase_1 Lyase
Representative CDS sequence Show only first row Show all	>Lus10009114 pacid=23150029 polypeptide=Lus10009114 locus=Lus10009114.g ID=Lus10009114.BGIv1.0 annot-version=v1.0 ATGGCAGCCTATGTTGTTGCTCGGCGCCGATCACTTGGGTTGATCACTTCTCACTTTGGTGAGTCTTCGTCATCAGTGCTCCGTTGTGCGACTCCGTGGA GATCATTTTCAACTTCCTTCAGGGAAGGGCGGGACACTTTTGGACCAATTCAAGTTCCATCGGATAAGTTATGGGGTGCACAAACTCAAAGATCATTGCA GAATTTTGATATTGGTGGTGAACGTGAGCGAATGCCGGAGCCAATAATTCGTGCCTTTGGTATCCTCAAGAAATGTGCTGCTAAGGTGAACATGGACTAT GGTCTTGATCCAACAATTGGTAAGGCCATCCTTCAGGCTGCTCAAGAGGTTGCCGAGGGGAAGCTAAATGATCATTTTCCACTTGTTGTGTGGCAGACTG GTAGTGGCACTCAAAGTAATATGAATGCCAATGAGGTTATTGCTAATCGAGCTGCTGAGATCCTTGGCCATAAGCGTGGAGATAAGCACGTGCATCCAAA TGACCATGTTAATAGATCTCAATCTTCTAATGACACTTTTCCAACTGTGATGCATATTGCCGCTGGAATGGAAATAAACTCGAGATTAATTCCAAAACTA AAAACTTTGCACACTACCCTTCATTCCAAGTCTGTTGAATTCAATGATATTGTCAAAATTGGTCGTACTCACACTCAAGATGCAACACCTTTGACACTCG GCCAGGAGTTTAGCGGCTATACCACCCAAGTGAAGTATGGAATTGATCGAGTCACGTGCACTCTGCCTCATATGTATCAGCTTGCACAAGGCGGAACTGC AGTTGGCACCGGATTGAACACAAAGAAAGGGTTTGATGTAAAGATTGCTAGAGCAGTAGCCGAGGAGACGAACCTACCATTTGTGACAGCAGAAAACAAG TTCGAAGCTCTGGCTGCACATGATGCTTTTGTTGAATGTAGTGGAGCCCTTAACACGCTTGCTACTTCTTTGATGAAGGTGGCCAATGATATACGATTGT TGGGAAGTGGTCCAAGATGTGGTCTTGGTGAACTCATTCTTCCAGAAAATGAGCCAGGCAGCAGTATTATGCCTGGAAAAGTTAACCCAACCCAGTGCGA GGCACTTACAATGGTCTGTGCTCAGGTTATGGGAAACCATGTGGCAATAACAGTCGGCGGAGCAAATGGACACTTTGAATTAAATGTTTTCAAGCCAATG ATTGCAAGTGGTCTCCTACATTCTGTGAGATTGCTTGGAGACGCCTCATCTTCTTTCGAGAAGAACTGCGTGAGGGGAATTCAAGCTAACAAAGAACGGA TATCAAAGCTGCTGCACGAGTCACTTATGCTGGTTACATCATTGAATCCGAAAATTGGTTATGACAATGCTGCTGCAGTCGCTAAGCTTGCCCACAAGGA AGGAAGCACCCTGAAGGAAGCCGCACTGAAACTGGGAGTTCTGACCAGCGAAGAGTTTGATAACTTGGTGGTACCGGAGAAGATGATTGGACCAACTGAC TGA
AA sequence Show only first row Show all	>Lus10009114 pacid=23150029 polypeptide=Lus10009114 locus=Lus10009114.g ID=Lus10009114.BGIv1.0 annot-version=v1.0 MAAYVVARRRSLGLITSHFGESSSSVLRCATPWRSFSTSFREGRDTFGPIQVPSDKLWGAQTQRSLQNFDIGGERERMPEPIIRAFGILKKCAAKVNMDY GLDPTIGKAILQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGDKHVHPNDHVNRSQSSNDTFPTVMHIAAGMEINSRLIPKL KTLHTTLHSKSVEFNDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVTCTLPHMYQLAQGGTAVGTGLNTKKGFDVKIARAVAEETNLPFVTAENK FEALAAHDAFVECSGALNTLATSLMKVANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGANGHFELNVFKPM IASGLLHSVRLLGDASSSFEKNCVRGIQANKERISKLLHESLMLVTSLNPKIGYDNAAAVAKLAHKEGSTLKEAALKLGVLTSEEFDNLVVPEKMIGPTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10009114 [exp]	0	1
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043117 [exp]	3.7	0.8002
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Lus10010161 [exp]	5.7	0.8315
AT3G55550			Concanavalin A-like lectin pro...		Lus10024365 [exp]	5.9	0.8142
AT2G47510		FUM1	fumarase 1 (.1.2)		Lus10028532 [exp]	7.8	0.8734
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10006180 [exp]	12.0	0.7507
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Lus10002960 [exp]	13.5	0.7875
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Lus10006059 [exp]	19.1	0.8209
AT2G42250		CYP712A1	"cytochrome P450, family 712, ...		Lus10023827 [exp]	19.2	0.7999
AT4G26910			Dihydrolipoamide succinyltrans...		Lus10043116 [exp]	20.4	0.7871
AT3G18830		ATPMT5, AtPLT5	ARABIDOPSIS THALIANA POLYOL/MO...		Lus10034623 [exp]	27.0	0.7555

Compare expression of checked genes

Lus10009114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.