Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G02000 247 / 1e-74 GAD3 glutamate decarboxylase 3 (.1) AT2G02010 241 / 2e-72 GAD4 glutamate decarboxylase 4 (.1) AT1G65960 233 / 6e-71 GAD2 glutamate decarboxylase 2 (.1.2) AT5G17330 237 / 1e-70 GAD1, GAD GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) AT3G17760 201 / 2e-57 GAD5 glutamate decarboxylase 5 (.1.2) AT1G23000 86 / 7e-18 Heavy metal transport/detoxification superfamily protein (.1) AT5G37860 76 / 6e-15 Heavy metal transport/detoxification superfamily protein (.1) AT3G06130 76 / 2e-14 Heavy metal transport/detoxification superfamily protein (.1.2) AT5G27690 74 / 6e-14 Heavy metal transport/detoxification superfamily protein (.1) AT5G19090 74 / 7e-14 Heavy metal transport/detoxification superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028529 [exp] 419 / 8e-144 AT1G23000 81 / 4e-17 Heavy metal transport/detoxification superfamily protein (.1) Lus10028530 [exp] 349 / 7e-114 AT5G17330 855 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10019136 [exp] 241 / 4e-72 AT2G02010 883 / 0.0 glutamate decarboxylase 4 (.1) Lus10035096 [exp] 229 / 2e-66 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1) Lus10034426 [exp] 202 / 6e-62 AT2G02010 227 / 4e-73 glutamate decarboxylase 4 (.1) Lus10031934 [exp] 167 / 6e-49 AT2G02010 229 / 2e-74 glutamate decarboxylase 4 (.1) Lus10034425 [exp] 166 / 4e-46 AT5G17330 610 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Lus10032445 [exp] 82 / 1e-16 AT1G23000 129 / 2e-34 Heavy metal transport/detoxification superfamily protein (.1) Lus10041228 [exp] 81 / 4e-16 AT3G06130 149 / 3e-41 Heavy metal transport/detoxification superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G075300 [exp] 259 / 2e-79 AT5G17330 870 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.004G075200 [exp] 245 / 5e-74 AT5G17330 904 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.017G144421 [exp] 243 / 3e-73 AT5G17330 880 / 0.0 GLUTAMATE DECARBOXYLASE 1, glutamate decarboxylase (.1) Potri.010G100500 [exp] 243 / 5e-73 AT2G02010 879 / 0.0 glutamate decarboxylase 4 (.1) Potri.008G141100 [exp] 241 / 3e-72 AT2G02010 853 / 0.0 glutamate decarboxylase 4 (.1) Potri.012G039000 [exp] 206 / 3e-59 AT3G17760 816 / 0.0 glutamate decarboxylase 5 (.1.2) Potri.004G091700 [exp] 120 / 2e-30 AT1G23000 99 / 1e-23 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G128400 [exp] 88 / 2e-18 AT1G23000 137 / 1e-36 Heavy metal transport/detoxification superfamily protein (.1) Potri.010G114300 [exp] 82 / 2e-16 AT1G23000 128 / 2e-33 Heavy metal transport/detoxification superfamily protein (.1) Potri.008G202800 [exp] 82 / 3e-16 AT3G06130 150 / 6e-41 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [flax] [poplar] PLP_aminotran PF00282 [flax] [poplar] Pyridoxal_deC Pyridoxal-dependent decarboxylase conserved domain CL0061 [flax] [poplar] PF00403 [flax] [poplar] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Lus10009116 pacid=23150065 polypeptide=Lus10009116 locus=Lus10009116.g ID=Lus10009116.BGIv1.0 annot-version=v1.0 ATGTCTCTGTCGACAGCTAAGTCGGAGTCGGACGAGTCAGTCCACTCGACGTTCGCTTCCCGCTATGTCCGGACCACTCTCCCAAGGTTTAAGATGCCGG AGAATTCGATACCGAAGGAGGCGGCGTACCAGATAATAAACGACGAGCTGATGCTGGACGGGAATCCGAGGCTGAACCTGGCGTCGTTCGTGACGACGTG GATGGAGCCGGAGTGCGATAAGCTAATAATGGACTCCATCAACAAGAACTACGTCGACATGGATGAGTACCCAGCACCACTGAGCTCCAGGCATGGTTCT AGTCAAGTGATTGTACAATATTATCAGCTTATTCGTTTGGATCAAGAGGGATATAGGCACGTGGTGAATTGCATGGAGAACATGAAGGTGCTGGCGGCGG CGCTCGAGAAAACCGGAAGGTTCAACATAGTCTCCAAAGACGTTGGGGTCCCACTGGTGGCATTCTCCTTAAAGGACAGCTCATCTCACGACGAGTTCGA GATCGCCGACCTCCTCCGCCGCTACGGCTGGATCGTCCCGGCCTACACCATGCCCGCCGACGCCCAGCACGTCACCGTCCTCCGCGTTGTCATCCGCGAA GACTTCTCCCGCACCTTGGCCGAGCGCCTGGTCAACGACATCCAGAAGGTGCTGCACGACCTGGAGGTACTGCCGTCCAAGTTGAAGGCCAAGATGTCCA TGGCCGGAGAAGACGCCGACCAGTCTCTGTTCCAGAACAAGAAGACCGCCGTGGAGACCCAGCGGGAGGTCACCGAGCTCTGGAAGAAGTTCGTCATGGA GCGCAAGAGTAAGAAGAACGGCAGGAAGGCTGAAACTGAACCAGGCAAGGAATCACGAGAAGTGGGTTGGAACCTGTTACAAGAAACAACTTGGCAGAAT GAACAAACATCGAAAGAATCAGGACAACAGCACTGTGAGAAAGAAAAAGAACCATTTTATACCTTCAATCCAACAATGTCGAGCAATGGAGTTGAGCAGG CTCAGAAAGAGAAGCTCCACAAGCTTCAGGCACTGCGTCTATTCACTTCTCCTTCCAAAGAGCTTTTCTTTGAGCTGAAGCTTTTTTCTTTCTTCGGTTT CCCTCCTAAGCATGTCCTGAAAGTAAACGTGGACTGTGAAGGGTGTCGGAAGAAAGTCTGGAAATTGCTGAAGAAGATTGATGGTGTATACTCCATAGAC ATTGATGCAGAAACCCAGGAGGTGACTGTGTCAGGAGCTGTGCGTTCTGCTACTTTGATCAATATGTTAAACAAAGCTGGCAAATATGCAGAGCTTTGCT TTCCAAGAGTGCAGCTTCAAGCAGCTCTTGTCCCTAATAAACAGAACACGCTTCCTATTTCCATTGGAGATGAAGTTGAGGATCTCAGCGGCAGCTTCAG GAACCAGAACATAGGGATGGGTTCTTCTGGTACGACCCCTACAGATTTAATGGCCGTGGCAAGGATAGGAGATGTTTACAGGGATGAGGATAGGTTTGCC GGATGGAACAGCAATCTGGGATCAAATAGGCTTCAAGGAGGGTATCACGGGAGTTATGATAGATCTTTTGGGTTCTCTGGGATGCCAACTTACGAGGTCA ATCATCAGCCATTGATGGGGAACCAGCAAGGTTCATACCGCTACTTCCCATCTGCAGAGATGAACAATGGCTATATTGGCAACAGGATTCGAAATAATGA TATGAGGTTACCTGAGATGATGAATTATGGTCCTTCGTTGTTTCGTCCCCAAGCTGCTCCTATGGCCAGGATTGACTATAACCTTACAGCTGGACAGCAA CCTTACCGTTACATTTTGTATCAGTGA
AA sequence Show only first row Show all	>Lus10009116 pacid=23150065 polypeptide=Lus10009116 locus=Lus10009116.g ID=Lus10009116.BGIv1.0 annot-version=v1.0 MSLSTAKSESDESVHSTFASRYVRTTLPRFKMPENSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIMDSINKNYVDMDEYPAPLSSRHGS SQVIVQYYQLIRLDQEGYRHVVNCMENMKVLAAALEKTGRFNIVSKDVGVPLVAFSLKDSSSHDEFEIADLLRRYGWIVPAYTMPADAQHVTVLRVVIRE DFSRTLAERLVNDIQKVLHDLEVLPSKLKAKMSMAGEDADQSLFQNKKTAVETQREVTELWKKFVMERKSKKNGRKAETEPGKESREVGWNLLQETTWQN EQTSKESGQQHCEKEKEPFYTFNPTMSSNGVEQAQKEKLHKLQALRLFTSPSKELFFELKLFSFFGFPPKHVLKVNVDCEGCRKKVWKLLKKIDGVYSID IDAETQEVTVSGAVRSATLINMLNKAGKYAELCFPRVQLQAALVPNKQNTLPISIGDEVEDLSGSFRNQNIGMGSSGTTPTDLMAVARIGDVYRDEDRFA GWNSNLGSNRLQGGYHGSYDRSFGFSGMPTYEVNHQPLMGNQQGSYRYFPSAEMNNGYIGNRIRNNDMRLPEMMNYGPSLFRPQAAPMARIDYNLTAGQQ PYRYILYQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G02000		GAD3	glutamate decarboxylase 3 (.1)		Lus10009116 [exp]	0	1
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Lus10014175 [exp]	1.0	0.9254
AT1G76140			Prolyl oligopeptidase family p...		Lus10034558 [exp]	2.4	0.9108
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10036009 [exp]	2.4	0.9126
AT3G18440		ATALMT9	aluminum-activated malate tran...		Lus10032328 [exp]	2.6	0.8907
AT4G02210			unknown protein		Lus10042596 [exp]	2.8	0.8896
					Lus10019353 [exp]	2.8	0.9086
AT4G38840			SAUR-like auxin-responsive pro...		Lus10032173 [exp]	5.1	0.8684
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10028354 [exp]	5.9	0.9065
AT2G13680		GLS2, ATGSL02, ...	ARABIDOPSIS THALIANA GLUCAN SY...		Lus10000830 [exp]	7.6	0.8456
AT5G02390		DAU1	DUO1-activated unknown 1, Prot...		Lus10016715 [exp]	7.7	0.8969

Compare expression of checked genes

Lus10009116 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.