Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66510 505 / 7e-180 AAR2 protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028528 [exp] 583 / 0 AT1G66510 473 / 5e-166 AAR2 protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G123900 [exp] 565 / 0 AT1G66510 577 / 0.0 AAR2 protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05282 [flax] [poplar] AAR2 AAR2 protein
Representative CDS sequence Show only first row Show all	>Lus10009118 pacid=23150045 polypeptide=Lus10009118 locus=Lus10009118.g ID=Lus10009118.BGIv1.0 annot-version=v1.0 ATGGATCCCAACATAGCCTTGGAGCTTGTGAAACAGGGAGCTACACTGCTCCTCCTCGATGTTCCTCAGTACACTCTTATCGGCGTTGACACTCAGGTTT TCACTGTTGGTCCGGCTTTTAAGGGTATTAAGATGATTCCGCCTGGTGTTCATTTTCTATACTTCAGCTCCTCTACCAGGGAAGGCAAGGAGTTTTCACC AGTGATTGGTTCCTTTATTGATGTTGGTCCATCAGAGGTAATTGTTAGAAGATGGGAGCAGCAGGAGGAACGACTAGTTAAATTATCTGACGAAGAGACA GAGAGATTTGCACAAGCAGTTATACGTCTGGAATTTGATGGAAACCTTGGTCCTTACAATGTGAGCCAATATAGAGAGTGGAAAAGCTTGTCCAATTATC TCACGCGGAGCATTATTGAACGAATAGCTTTAGATGAGCAGTTGGTGAACAACAAGTTCTGCACGTCTACAACCACTGACAAGTCAACAATAAGAGCATG CTATTATACCCGGATTCCTCGCACTATTAAACATAAAGGAATCACTGCAATGGAACTTACTTCTTTGAATCTCGACAAGACAGAATTGCTAGAGAGCATT TTGACGAAACATTATGGAGGTAGCGAAGATGTCCTTCTTGGGGAGCTTCAGTTTTCATATATTGCATTTCTGATGGGGCAGTCACTTGAAGGTTTTTTCC AGTGGAAATCTCTTGTCAGTCTTTTGCTTGGCTGTGTAGAAGCTCCTTTCCGCACGAGGAGTCATCTATATGCCAAGTTCATCAAGGTAATATACTACCA ACTGAAATTTGGACTGCAGAAGGATAGGGAGGATGCCAACGGTGCAGGTGTAGGAGTATCATTGTTGTTGGATGAGTCTTGGTTCACTGCTGATAGCTTT TTGCATCGGCTTTTTAAGGAATTCTTTTCGCTGTTAGAAGAGGCATCTGTGATAGATGGAGATCTTCTCTCATGGAGCAGGAAACTGAAAGAAATGGTGG AGAATGAGTTGGGATGGGAGTTGCAGCAGAGTAATTCAGTTGATGGGATATACTTTGAGGAAGATGATGAGTATGCTCCGGCAGTAGTTAGTTTGGAGGA TCTAAGTATGAATGGAGGTGAAGTGTAA
AA sequence Show only first row Show all	>Lus10009118 pacid=23150045 polypeptide=Lus10009118 locus=Lus10009118.g ID=Lus10009118.BGIv1.0 annot-version=v1.0 MDPNIALELVKQGATLLLLDVPQYTLIGVDTQVFTVGPAFKGIKMIPPGVHFLYFSSSTREGKEFSPVIGSFIDVGPSEVIVRRWEQQEERLVKLSDEET ERFAQAVIRLEFDGNLGPYNVSQYREWKSLSNYLTRSIIERIALDEQLVNNKFCTSTTTDKSTIRACYYTRIPRTIKHKGITAMELTSLNLDKTELLESI LTKHYGGSEDVLLGELQFSYIAFLMGQSLEGFFQWKSLVSLLLGCVEAPFRTRSHLYAKFIKVIYYQLKFGLQKDREDANGAGVGVSLLLDESWFTADSF LHRLFKEFFSLLEEASVIDGDLLSWSRKLKEMVENELGWELQQSNSVDGIYFEEDDEYAPAVVSLEDLSMNGGEV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66510			AAR2 protein family (.1.2.3)		Lus10009118 [exp]	0	1
AT4G18040		LSP1, CUM1, AT....	eukaryotic translation Initiat...		Lus10015247 [exp]	4.8	0.7928
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10039604 [exp]	4.9	0.8235
AT3G21640		FKBP42, UCU2, T...	ULTRACURVATA 2, TWISTED DWARF ...		Lus10029505 [exp]	6.7	0.8155
AT4G08460			Protein of unknown function (D...		Lus10009772 [exp]	7.7	0.8218
AT1G07170			PHF5-like protein (.1.2.3)		Lus10018253 [exp]	12.1	0.7930
AT1G25260			Ribosomal protein L10 family p...		Lus10030073 [exp]	18.0	0.8143
AT1G65280			DNAJ heat shock N-terminal dom...		Lus10017919 [exp]	21.0	0.8048
AT5G25760		PEX4, UBC21	ubiquitin-conjugating enzyme 2...		Lus10009495 [exp]	23.5	0.7881
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Lus10029086 [exp]	27.5	0.8139
AT5G61310			Cytochrome c oxidase subunit V...		Lus10010008 [exp]	28.1	0.8056

Compare expression of checked genes

Lus10009118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.