Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37850 512 / 0 SOS4, ATSOS4 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) AT1G22940 56 / 2e-08 THIE, TH-1, TH1 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028527 [exp] 520 / 0 AT5G37850 464 / 8e-166 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10000451 [exp] 486 / 1e-174 AT5G37850 473 / 3e-170 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10010977 [exp] 485 / 5e-174 AT5G37850 471 / 2e-169 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Lus10001365 [exp] 50 / 3e-06 AT1G22940 720 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1) Lus10015466 [exp] 48 / 1e-05 AT1G22940 734 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G129000 [exp] 520 / 0 AT5G37850 534 / 0.0 SALT OVERLY SENSITIVE 4, pfkB-like carbohydrate kinase family protein (.1.2.3) Potri.003G015700 [exp] 53 / 1e-07 AT1G22940 710 / 0.0 THIAMINEE, THIAMINE REQUIRING 1, thiamin biosynthesis protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0118 [flax] [poplar] Ribokinase PF08543 [flax] [poplar] Phos_pyr_kin Phosphomethylpyrimidine kinase
Representative CDS sequence Show only first row Show all	>Lus10009119 pacid=23150060 polypeptide=Lus10009119 locus=Lus10009119.g ID=Lus10009119.BGIv1.0 annot-version=v1.0 ATGCTCGCTTCCTCTTACTTCTTCAGCGGCGTCGGCAGCCGTCTTCCGTCTCGAATTTACCGAACGACTCGCCTTTTCCGTGCAATGAGCTCCAGCAATT CGGCCACGGCGCCTCCGATATTGTCTCTGGCTCTTCCTTCTGAAACCGGTCGAGTTCTTAGCATTCAGTCTCACACGGTGCAGGGATACGTTGGCAACAA ATCAGCAGTTTTTCCTCTCCAGCTATTGGGCTATGACGTGGATCCCATCAATTCAGTACAGTTTTCAAACCACACAGGCAAGCTGTTCATCTTTTATGCC TGCTTCAAAGGACAAGTTTTGAATGGGCAACAGCTATGGGAACTAATAGAAGGTCTTGAAGCAAATAACTTGTTATACTATACTCACTTGCTAACAGGTT ACATAGGTTCAGAGTCATTTCTCAACACTATATTGCAGGTGGTCAATAAGCTTCGCACAATAAATCCCAAACTCACTTATGTATGTGATCCTGTGATGGG TGATGAAGGGAAGCTGTATGTCCCCTCAGACCTGGTAGCGGTGTACCGTGAGAAGGTTGTCCCTGTGGCATCAATGTTGACTCCTAATCAGTTTGAAGCT GAGCTGTTAACTGGCTCAAGGATTGTGTCTGAAAGTGATGCCCGTGAGGCTTGCAATATGCTTCATGCTGCTGGACCTTCGAAGGTTGTGATTACTAGCA TTAACATAGGTGGTGATGGTCTTCTTCTCATTGGCAGCCATCAAAAGGAGAAGGGCCAGTCAGCTCAACAATTCAAGATTGCGATTCACAAAATTCCTGC ATATTTCACGGGAACAGGGGATTTAATGACAGCACTTCTTCTTGGATGGAGCAATAAATATCCGGACAATCTTGACAAGGCTGCGGAGCTTGCGGTATCA AGCTTGCAGGCTCTACTTCAAAGAACGTTGAACGATTATCGAAAGGCTGGATACGAACCAGCAGCTAGCAGCTTGGAGATTCAATTGATTCAGAGCCAAG ACGACATTCGCAACCCAACTGTTGAATACAAAGCCCAAAAGTACTCTTCGTAA
AA sequence Show only first row Show all	>Lus10009119 pacid=23150060 polypeptide=Lus10009119 locus=Lus10009119.g ID=Lus10009119.BGIv1.0 annot-version=v1.0 MLASSYFFSGVGSRLPSRIYRTTRLFRAMSSSNSATAPPILSLALPSETGRVLSIQSHTVQGYVGNKSAVFPLQLLGYDVDPINSVQFSNHTGKLFIFYA CFKGQVLNGQQLWELIEGLEANNLLYYTHLLTGYIGSESFLNTILQVVNKLRTINPKLTYVCDPVMGDEGKLYVPSDLVAVYREKVVPVASMLTPNQFEA ELLTGSRIVSESDAREACNMLHAAGPSKVVITSINIGGDGLLLIGSHQKEKGQSAQQFKIAIHKIPAYFTGTGDLMTALLLGWSNKYPDNLDKAAELAVS SLQALLQRTLNDYRKAGYEPAASSLEIQLIQSQDDIRNPTVEYKAQKYSS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37850		SOS4, ATSOS4	SALT OVERLY SENSITIVE 4, pfkB-...		Lus10009119 [exp]	0	1
AT2G16890			UDP-Glycosyltransferase superf...		Lus10022220 [exp]	2.0	0.7689
AT5G09650		ATPPA6	pyrophosphorylase 6 (.1)		Lus10035653 [exp]	4.2	0.7327
AT4G32770		ATSDX1, VTE1	tocopherol cyclase, chloroplas...		Lus10011696 [exp]	4.2	0.7651
AT1G79810		PEX2, TED3, ATP...	ARABIDOPSIS PEROXIN 2, Pex2/Pe...		Lus10037580 [exp]	4.5	0.6969
AT1G78560			Sodium Bile acid symporter fam...		Lus10035803 [exp]	5.3	0.7526
AT5G43100			Eukaryotic aspartyl protease f...		Lus10011513 [exp]	6.9	0.7182
AT3G11170		AtFAD7, FADD, F...	FATTY ACID DESATURASE D, fatty...		Lus10040660 [exp]	9.9	0.7711
AT4G30400			RING/U-box superfamily protein...		Lus10023206 [exp]	10.1	0.7545
AT1G28610			GDSL-like Lipase/Acylhydrolase...		Lus10010208 [exp]	13.7	0.7196
AT5G06750			Protein phosphatase 2C family ...		Lus10021056 [exp]	15.2	0.7651

Compare expression of checked genes

Lus10009119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.