Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18975 196 / 4e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) AT4G21190 108 / 3e-27 EMB1417 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G66480 102 / 8e-26 PMI2 plastid movement impaired 2 (.1) AT5G37840 99 / 2e-24 unknown protein AT2G01340 95 / 6e-23 At17.1 unknown protein AT1G71015 93 / 2e-22 unknown protein AT1G04590 74 / 2e-14 EMB2748 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028526 [exp] 275 / 2e-91 AT4G18975 327 / 7e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Lus10043472 [exp] 99 / 2e-24 AT5G37840 134 / 2e-39 unknown protein Lus10016709 [exp] 94 / 5e-23 AT2G01340 147 / 7e-45 unknown protein Lus10036005 [exp] 96 / 7e-23 AT2G01340 174 / 2e-54 unknown protein Lus10039292 [exp] 80 / 1e-16 AT4G21190 339 / 7e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027535 [exp] 79 / 1e-16 AT4G21190 302 / 5e-103 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019008 [exp] 71 / 1e-13 AT1G04590 281 / 5e-93 unknown protein Lus10015943 [exp] 70 / 1e-13 AT1G04590 284 / 3e-95 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G076800 [exp] 215 / 2e-68 AT4G18975 320 / 2e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1), Pentatricopeptide repeat (PPR) superfamily protein (.2), Pentatricopeptide repeat (PPR) superfamily protein (.3), Pentatricopeptide repeat (PPR) superfamily protein (.4) Potri.017G128800 [exp] 167 / 9e-51 AT1G66480 192 / 8e-62 plastid movement impaired 2 (.1) Potri.004G088200 [exp] 159 / 1e-47 AT2G01340 179 / 1e-56 unknown protein Potri.010G113800 [exp] 129 / 8e-36 AT2G01340 207 / 1e-67 unknown protein Potri.008G128700 [exp] 129 / 1e-35 AT2G01340 206 / 3e-67 unknown protein Potri.017G148700 [exp] 110 / 2e-27 AT4G21190 339 / 3e-116 embryo defective 1417, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G091500 [exp] 76 / 1e-15 AT1G04590 272 / 3e-90 unknown protein Potri.016G103000 [exp] 76 / 2e-15 AT1G04590 300 / 9e-101 unknown protein Potri.016G102800 [exp] 53 / 9e-09 AT1G04590 158 / 2e-48 unknown protein Potri.014G040200 [exp] 44 / 0.0001 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009120 pacid=23150016 polypeptide=Lus10009120 locus=Lus10009120.g ID=Lus10009120.BGIv1.0 annot-version=v1.0 ATGGGAAACGCCATGGGCTGCAAGGGAAAGAAGACGAAGGTGATGAAGGTCACCGGCGAGACATTCAAGCTCAAAACACCGGCGAGGGCCAACGACGTCG TTAAAGACTACCCGGGTCACGTCCTGCTGGACTCGGATGCGGTCAAGCACTTCGGGATCCGGGCCAGGCCGCTGGATCCGAGTCAGGAGCTGAAGCCCAA GAAGATTTACTTTCTTGTGGAGATGCCGAAATTCCCGGACGATGACCAGCAGCAGCGCCAGCGCGGGGCCCGGCGCATCGGTGTCGGACCTCGGTGTGGT TGGGGGTGGTCCCGCGGCGGGGGCACGCTGCCGCTCGTAGTCGACGGTGGTGGTCCCGGCGGCGGAGGACCGATGCGCGTGAAGGTGAGGCTTCCGAGAG CGCAGGTGGAGAGGTTGATGGCGGAGAGCAACGGCGGCGCTGAGGTGGCGGAGAAAATAATCGATCTTTACATGGGGAATTCGAACGAACAGGAGCAGGT AGGCGCCGGGATGAGCCGGCGGCATGTTCATTGGCGGCCGGAGCTGATGAGCATAGAAGAAAGCCTAAAGAAGAACAAGGTAGCAAAATGGATGCTGAGC AAAGGTCAAGGGGACACAATGGCAACATATGACACCCTTTTGTTAGCATTTGATATGGATGGCAGGGTAGACGAAGCGAAGGCACTATGGACCATGGTTT TGCATATCCACCACCGCTCTATATCGAAACGTTTATTTGCAAGGATGATTTTTCTATATGATCACCATGATATCCCGAATGGGATTGTAGAGGTGTTTGC GGACATGGAGGAGTTGGGAGTACGACCTGATGAAGATACGGTCAGGAAAGTGGCTCGTGCGTTCAAGACACTAGGCCAGAAAGAGAAAGCAATGTTGGTT CTCCAAAGATACGTATCGGATTGGAAATATGTCCACTTCAACGGCGAAAGGGTTAGAGTGAGAAGAAACAAATGGGTCGACGGGTGA
AA sequence Show only first row Show all	>Lus10009120 pacid=23150016 polypeptide=Lus10009120 locus=Lus10009120.g ID=Lus10009120.BGIv1.0 annot-version=v1.0 MGNAMGCKGKKTKVMKVTGETFKLKTPARANDVVKDYPGHVLLDSDAVKHFGIRARPLDPSQELKPKKIYFLVEMPKFPDDDQQQRQRGARRIGVGPRCG WGWSRGGGTLPLVVDGGGPGGGGPMRVKVRLPRAQVERLMAESNGGAEVAEKIIDLYMGNSNEQEQVGAGMSRRHVHWRPELMSIEESLKKNKVAKWMLS KGQGDTMATYDTLLLAFDMDGRVDEAKALWTMVLHIHHRSISKRLFARMIFLYDHHDIPNGIVEVFADMEELGVRPDEDTVRKVARAFKTLGQKEKAMLV LQRYVSDWKYVHFNGERVRVRRNKWVDG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	0	1
AT4G00335		RHB1A	RING-H2 finger B1A (.1.2.3)		Lus10017788 [exp]	1.4	0.8973
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10003699 [exp]	2.4	0.8684
AT4G00500			alpha/beta-Hydrolases superfam...		Lus10037847 [exp]	4.5	0.8326
AT5G06130			chaperone protein dnaJ-related...		Lus10022688 [exp]	7.0	0.8378
AT5G27730			Protein of unknown function (D...		Lus10020653 [exp]	8.5	0.8553
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	8.7	0.8609
AT1G52320			unknown protein		Lus10035887 [exp]	8.9	0.8430
AT5G08030		AtGDPD6	glycerophosphodiester phosphod...		Lus10040516 [exp]	9.9	0.8309
AT2G31510		ATARI7, ARI7	ARABIDOPSIS ARIADNE 7, ARIADNE...		Lus10027027 [exp]	16.2	0.8369
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	21.5	0.8136

Compare expression of checked genes

Lus10009120 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.