Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03380 812 / 0 DEG7, DEGP7 degradation of periplasmic proteins 7, DegP protease 7 (.1) AT3G03370 61 / 5e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028521 [exp] 1902 / 0 AT3G03380 1385 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017637 [exp] 1035 / 0 AT3G03380 618 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10042507 [exp] 1029 / 0 AT3G03380 1144 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10033594 [exp] 462 / 6e-143 AT3G03380 592 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10017636 [exp] 226 / 2e-67 AT3G03380 226 / 3e-68 degradation of periplasmic proteins 7, DegP protease 7 (.1) Lus10038155 [exp] 96 / 1e-21 AT3G03380 94 / 1e-21 degradation of periplasmic proteins 7, DegP protease 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G128300 [exp] 1507 / 0 AT3G03380 1694 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088600 [exp] 1284 / 0 AT3G03380 1442 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.004G088700 [exp] 1209 / 0 AT3G03380 1365 / 0.0 degradation of periplasmic proteins 7, DegP protease 7 (.1) Potri.018G001301 [exp] 45 / 0.0003 AT5G27660 119 / 4e-30 Trypsin family protein with PDZ domain (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009122 pacid=23150023 polypeptide=Lus10009122 locus=Lus10009122.g ID=Lus10009122.BGIv1.0 annot-version=v1.0 ATGGCAGAGTTGGAGGCCAGCTTGAAGGACGGACTCTGCATGGACATCGACCCTCCGTTTCGGGAGAACGCTGCCACCGCCGAGGACTGGCGGAAGTCTC TGGAAAAGGTGGTTCCGGCTGTGGTGGTGCTGCGAACCACTGCCTGCCGTGCATTTGACACGGAGTCCGCCGGAGCAAGCTATGCCACTGGATTCGTTGT CGACAAGCGTCTGGGGATCATTCTCACCAATCGCCATGTTGTTAAGCCTGGACCCGTAGTTGCAGAGGCCATGTTTCTGAACCGGGAAGAAATTCCAGTG TATCCAATATACAGAGATCCGGTCCATGATTTTGGCTTCTTTCGCTATGATCCTAGTAAAATACAATTTCTCAAATATGAGGAGATTCCTCTTGCCCCCG AGGCTGCGAGTGTTGGACTTGAAATCAGGGTTGTTGGAAATGATAGTGGCGAGAAGGTTTCAATTTTGGCTGGTACACTTGCTCGTTTGGATAGAGATGC TCCTCACTATAAAAAGGATGGATATAATGATTTCAACACTTTCTACATGCAAGCAGCATCTGGAACTAAGGGAGGTTCAAGTGGCTCTCCAGTCATTGAT TCGCAAGGGAGGGCTGTGGCTTTGAATGCTGGGAGCAAGTCTTCAAGTGCTTCAGCTTTTTTCTTACCTCTAGAACGAGTTGTTAGGGCGCTAAAACTTC TTCAAAAGGGGAGGGATACATACACAAACAAGTGGGAGACAGTTTCTATACCACGCGGTACGCTTCAGGTAACATTTCTACACAAGGGATTTGATGAAAC ACGTCGACTTGGTCTCAAGAGTGAAACTGAGCAGATGGTCAGGGTTGCGTCTCCTCTTGTTGAAACTGGAATGCTAGTAGTTGACGCCGCGGTCCCGGGT GGGCCAGCTCATACTCATTTGGAACCAGGCGATATGCTTGTTCGAGTTAATGGAGAAGTCATGACCCAATTTCTTAAACTGGAGACCCTACTTGACGACA GTGTTGGTGAAGTGATTGAATTGCAGATAGAAAGAGGTGGCACATCCTTCACAGTGAACTTAGTGGTTCAGGATCTTCACTCGATAACTCCCGACTACTT CTTGGAAGTAAGCGGGGCAGTTATACATCCACTGTCTTATCAACAGGTTGTCCAGAGAAATCTCTTTTATCATAAGCCTATTCCTTCACGTGCTAGGAAC TTCCGTTTCCACTGTGGTTTGGTGTATGTTGCAGACCCCGGGTATATGTTATTTCGAGCTGGAATTCCTCGTCATGCCATAATTATGAAGTTTGCTGGGG AGGAAATATCATGCATTGATGAACTAATTCTTGTTTTAAGTAAGCTATCAAGGGGTGGCCGAGTGCCCTTAGAGTACATTAGCCACATAGATCGCCATCG AAGGAAGTCTGTCCTAGTTACAGTTGACCGCCATGAATGGTATGCCCCTCCACAGATATATACTCGTGACGATAGCTCCGGTCTGTGGATGGCAAAGCCT GCTATTCAACCAGAGTCCTTTCTTCCAGCAGCTAGTGTTAACAACAACACAATACAACCTTTACCCAGTGAAACAGTTATATTAAGTGCAGAGGCACAAA ATTTGAAAAATATTAATCAAATTGGCAACATGGAGTCTGCAAATGGTGTCATAGCTATGGAAACATGCAATGAGCTTTCTCGAAACGAATCTGATATTGG ATTAAAGAAACGACGGTTATCTGATCTTTCTGGAAATGAAATTGCTGCTGGTGATGATTCCTTTTGCAAACATGAGGAACTGAATATGGAGGACTCAAAT AGCAACGGGAATGGTGTTTTAATCGATAATCAGGACACTGTTGGTGTGTCAGCTGTAGCTAATGCTTCATTTGCTGAGAGTGTGATAGAACCTACACTTG TGATGTTTGAGCCCACCCTTTGCCAATTTTTCCTCTCCCCCTGTACTGTTGTGGTGTCTGTTGGAACAGATCCTCCATTACGCCGTGGCGATTCAGTCTA TCTTGTGGGTTTAAGTAGAAGTCTACAAGCAACATCCAGGAAATCAATTGTTACCAACCCTTGCGCTGCTTTAAATATTGGCTCAGCCGATTCTCCACGG TACAGAGCGACAAATATGGAAGTCATAGAACTAGATACAGATTTTGGCAGTACTTTCTCGGGTGTGCTAACTAATGAGCAAGGGAAGGTGCAAGCTATTT GGGCAAGTTTTTCTACTCAGTTGAAATTCAGCGGTAATTCATCTGAAGATCATCAATTTGTTCGAGGAATCCCTAGTTATGCAGTGAGTGAAGTCCTTGA CAAGATCATATCTGGTGCAAATGGACCATCCCTTCTCATTAATGGCATTAGAAGGCCAATGCCACTTGTCAGGATTCTGGAGGTTGAGCTATATCCAACT CTGCTTTCAAAAGCACGAAGTTTCGGCCTGAGTGACAATTGGGTGCAAGCTCTTGTGAAGAAGGACCCGATTAGAAGGCAAGTTCTCCGTGTAAAAGGTT GTTTTGCTGGATCAAAGGCTGAAAATATACTAGAACAAGGAGATATGATTTTAGCTGTCAACAAAGCACCCGTGACATGCTTCCGAGACATAGAGAAAGC TTGTCAAGATTTAGATAAAGTAGAAGACACTGACGGGACGCTCAAAATTACGATATTTGGACAAGGTCGTGAAATTGATCTTGCAGTGGGAACTGATGTT AGGGATGGTAATGGAACAACTCGGACGATAAATTGGTGCGGATGTGTTGTACAGGATCCACATCCGGCAGTTCGTGCTCTGGGATTTCTGCCTGAAGAAG GTCATGGTGTTTATGTGGCCAGGTGGTGCCATGGGAGCCCTGTGCATAGATACGGGCTGTATGCCCTTCAATGGATAGTTGAAGTCAACGGAAAACCAAC TCCCAATATAGACGCGTTCATTAACGTGGCCAAGGAACTGGAACATGGGGAGTTTGTGAGGGTAAGAACAGTTCACCTAAACGGGAAGCCTCGTGTGATG ACGCTTAAGCAAGATCTTCATTACTGGCCAACTTGGGAGTTGAGATTCCATCCCGATACCTCCATGTGGCGTCGTCAAACAATCAACTGCAAATTCTCTA CTGATACACCAAAATTACTGTGA
AA sequence Show only first row Show all	>Lus10009122 pacid=23150023 polypeptide=Lus10009122 locus=Lus10009122.g ID=Lus10009122.BGIv1.0 annot-version=v1.0 MAELEASLKDGLCMDIDPPFRENAATAEDWRKSLEKVVPAVVVLRTTACRAFDTESAGASYATGFVVDKRLGIILTNRHVVKPGPVVAEAMFLNREEIPV YPIYRDPVHDFGFFRYDPSKIQFLKYEEIPLAPEAASVGLEIRVVGNDSGEKVSILAGTLARLDRDAPHYKKDGYNDFNTFYMQAASGTKGGSSGSPVID SQGRAVALNAGSKSSSASAFFLPLERVVRALKLLQKGRDTYTNKWETVSIPRGTLQVTFLHKGFDETRRLGLKSETEQMVRVASPLVETGMLVVDAAVPG GPAHTHLEPGDMLVRVNGEVMTQFLKLETLLDDSVGEVIELQIERGGTSFTVNLVVQDLHSITPDYFLEVSGAVIHPLSYQQVVQRNLFYHKPIPSRARN FRFHCGLVYVADPGYMLFRAGIPRHAIIMKFAGEEISCIDELILVLSKLSRGGRVPLEYISHIDRHRRKSVLVTVDRHEWYAPPQIYTRDDSSGLWMAKP AIQPESFLPAASVNNNTIQPLPSETVILSAEAQNLKNINQIGNMESANGVIAMETCNELSRNESDIGLKKRRLSDLSGNEIAAGDDSFCKHEELNMEDSN SNGNGVLIDNQDTVGVSAVANASFAESVIEPTLVMFEPTLCQFFLSPCTVVVSVGTDPPLRRGDSVYLVGLSRSLQATSRKSIVTNPCAALNIGSADSPR YRATNMEVIELDTDFGSTFSGVLTNEQGKVQAIWASFSTQLKFSGNSSEDHQFVRGIPSYAVSEVLDKIISGANGPSLLINGIRRPMPLVRILEVELYPT LLSKARSFGLSDNWVQALVKKDPIRRQVLRVKGCFAGSKAENILEQGDMILAVNKAPVTCFRDIEKACQDLDKVEDTDGTLKITIFGQGREIDLAVGTDV RDGNGTTRTINWCGCVVQDPHPAVRALGFLPEEGHGVYVARWCHGSPVHRYGLYALQWIVEVNGKPTPNIDAFINVAKELEHGEFVRVRTVHLNGKPRVM TLKQDLHYWPTWELRFHPDTSMWRRQTINCKFSTDTPKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G03380		DEG7, DEGP7	degradation of periplasmic pro...		Lus10009122 [exp]	0	1
AT3G12770		MEF22	mitochondrial editing factor ...		Lus10000706 [exp]	4.0	0.7926
AT1G24460		TNO1	TGN-localized SYP41 interactin...		Lus10006252 [exp]	4.6	0.8009
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10007427 [exp]	4.9	0.8158
AT3G10540			3-phosphoinositide-dependent p...		Lus10017448 [exp]	5.7	0.7190
AT5G06120			ARM repeat superfamily protein...		Lus10041603 [exp]	16.1	0.8070
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10017272 [exp]	25.5	0.7903
AT5G66030		ATGRIP, GRIP	Golgi-localized GRIP domain-co...		Lus10010675 [exp]	29.3	0.7323
AT3G45850			P-loop containing nucleoside t...		Lus10036146 [exp]	30.2	0.7555
AT2G39580			unknown protein		Lus10029459 [exp]	30.7	0.7081
AT1G75850		VPS35B	VPS35 homolog B (.1)		Lus10013565 [exp]	33.2	0.7817

Compare expression of checked genes

Lus10009122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.