Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77360 155 / 2e-41 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 140 / 6e-36 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 131 / 7e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20300 128 / 1e-31 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22670 115 / 2e-27 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G02420 110 / 7e-26 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62470 110 / 1e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 109 / 3e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 109 / 4e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74900 106 / 1e-24 OTP43 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028520 [exp] 877 / 0 AT5G37820 215 / 4e-64 NODULIN- 26-LIKE MAJOR INTRINSIC PROTEIN 5, NOD26-like intrinsic protein 4;2 (.1) Lus10017633 [exp] 588 / 0 AT1G77360 183 / 2e-51 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033591 [exp] 307 / 8e-102 AT1G77360 121 / 4e-31 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10033590 [exp] 258 / 1e-83 AT3G62470 98 / 2e-23 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 159 / 4e-42 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 140 / 8e-36 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 137 / 1e-34 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 136 / 1e-34 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 132 / 9e-33 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126600 [exp] 517 / 0 AT1G77360 173 / 5e-48 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G045800 [exp] 318 / 2e-103 AT1G77360 192 / 4e-55 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 174 / 1e-48 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 142 / 2e-36 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 124 / 2e-30 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 125 / 3e-30 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 124 / 6e-30 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G245400 [exp] 120 / 4e-29 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G079400 [exp] 114 / 7e-27 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G070200 [exp] 110 / 7e-26 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10009123 pacid=23150061 polypeptide=Lus10009123 locus=Lus10009123.g ID=Lus10009123.BGIv1.0 annot-version=v1.0 ATGGAGAGCGGCCGCTACGACTTCCACCACACCCACCGGCGGGACGACCATCTTCCCCAGCACGGCTCGACTTCGCCATCCTCAAATCTGCGGCAGCATC AGTCATCTTCTTCGTTTCATCCCCCAGATTTCCCTTCACACACCGACATCCCAAATCTCCCTCAGAAAATAAAGCTCATCTGCGAAATCATCGCCACAAC GCCGTCGATCGCCGTAGAGAGAGTCCTCGAAGGCACCGGAATCAGCGTAACACAGGCGGAGGCCGAGCAAGTTCTCAAGCTCTCTTACTCCTCTCCAGCC ACTTCAGTCAAGTTCTTCCGCTGGAGCGGGTTGCGGCTCAGCGGCGACGGCGGACACTCCCCTTACGCTTGGAACCTAGTGGTTGACCTTCTCGGTAAGA ATCGCCTCTTCGATGCAATGTGGGACTCTGTTAAGTCCATGCTCGTAAGATTAGTTTCTTCAGCTACTTTCTCTTCAATTTTCGGTAGCTATGTATCCGC TGGTAAGGCAAAGGAGGCTATTATGACTTTCGAAGTTATGGATCAATACGGCTGCAATCATGATGTTGTGGCCTTGAATTCATTGTTGAGTGCCATCTCT AGAGATGGCAAAACTATACAAGCATTTGAATTTTTACACGTAGCTCACCAGCATATGAATATCAGGCCTGATGCTGATTCATACGCCATCCTATTAGAAG GATGGGAGAAGGAGATGAATCTGGTCTCCTCCAGAGAAACTTTCTCCGAGATGATCGAATGGGTCGGATGGGACTCGAGAAATGTCCCTGCTTACGATTC CTTTCTGTGCACTTTGATTTCATGTTCCGAAGGAACAATGATGGAAGAGGTTTTGAGACATTTGGAGAGAATGAAGGAGAAAGGATGCTGTCCAGGTATT AGGTTCCTGACATTGGCTCTTCAACAGTGTCGTAAACGTAGTGATGTCGAATCTGCCGAGTTTGTTTGGGAGACAATGGTGGGTGGTGGCTTCGGAATCA AGCCTGATGCGAGGCTGTACAATGCGATGATTGTTTTGTATTGTTGTTCCAAGAACACCAATAGGGCAGTAAATCTCATTGATGAGATGGTTTGTAAAAG GGTATTACCCGATGTGCAGAGTTACAACGGGTTGTTCCGGTTCTTAATCGAGAGTAGAAGATTGGAAGATGCATCGGCATTGTTCACCGAGCTGGTTAGA AACGGCTGCATCCCTAACCAATCGAATTGCGGCAGAGCAGTCGAGGTGTTTCTGGAATCGGGGTATGGTGGTATGGCTATACGGGTTTGGGAATCGATGG AACCGAATTATAAGCTGGATTTGGAGGAGACTGGAAACTTGCTGATCGTGGGGCTGGTTAAGTTGTGTCTGGTTCCGGAGGCAGTAGTTTACGCTGAGAG CACGATTAAGAAAGGGATTAAGCTGACTTCAGCGACGATTTCGGTGTTGGAGCACTGCCTTACTGAAGTAAGGAAGGAGTTGGTGTATGAAAGGATCCTG AGGAAGTGGAAGAACTCTTTTAGTGAGATTGAAACAATGTAG
AA sequence Show only first row Show all	>Lus10009123 pacid=23150061 polypeptide=Lus10009123 locus=Lus10009123.g ID=Lus10009123.BGIv1.0 annot-version=v1.0 MESGRYDFHHTHRRDDHLPQHGSTSPSSNLRQHQSSSSFHPPDFPSHTDIPNLPQKIKLICEIIATTPSIAVERVLEGTGISVTQAEAEQVLKLSYSSPA TSVKFFRWSGLRLSGDGGHSPYAWNLVVDLLGKNRLFDAMWDSVKSMLVRLVSSATFSSIFGSYVSAGKAKEAIMTFEVMDQYGCNHDVVALNSLLSAIS RDGKTIQAFEFLHVAHQHMNIRPDADSYAILLEGWEKEMNLVSSRETFSEMIEWVGWDSRNVPAYDSFLCTLISCSEGTMMEEVLRHLERMKEKGCCPGI RFLTLALQQCRKRSDVESAEFVWETMVGGGFGIKPDARLYNAMIVLYCCSKNTNRAVNLIDEMVCKRVLPDVQSYNGLFRFLIESRRLEDASALFTELVR NGCIPNQSNCGRAVEVFLESGYGGMAIRVWESMEPNYKLDLEETGNLLIVGLVKLCLVPEAVVYAESTIKKGIKLTSATISVLEHCLTEVRKELVYERIL RKWKNSFSEIETM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77360			Tetratricopeptide repeat (TPR)...		Lus10009123 [exp]	0	1
AT5G13520			peptidase M1 family protein (....		Lus10023479 [exp]	3.7	0.8850
AT3G18240			Ribosomal protein S24/S35, mit...		Lus10008778 [exp]	9.8	0.8445
AT5G07590			Transducin/WD40 repeat-like su...		Lus10032495 [exp]	13.2	0.8679
AT4G10630			Glutaredoxin family protein (....		Lus10008270 [exp]	15.0	0.8799
AT5G60670			Ribosomal protein L11 family p...		Lus10041308 [exp]	15.1	0.8828
AT2G37020			Translin family protein (.1.2)		Lus10020710 [exp]	19.1	0.8793
AT1G27435			unknown protein		Lus10035173 [exp]	20.6	0.8577
AT3G09670			Tudor/PWWP/MBT superfamily pro...		Lus10016267 [exp]	25.7	0.8129
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Lus10018109 [exp]	26.6	0.8585
AT3G18880			Nucleic acid-binding, OB-fold-...		Lus10017467 [exp]	27.0	0.8375

Compare expression of checked genes

Lus10009123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.