Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G37790 598 / 0 Protein kinase superfamily protein (.1) AT1G66460 560 / 0 Protein kinase superfamily protein (.1) AT1G77280 273 / 3e-82 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 264 / 3e-82 Protein kinase superfamily protein (.1.2.3) AT2G16750 253 / 3e-76 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 251 / 2e-74 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT5G63940 250 / 2e-74 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G18890 219 / 5e-66 Protein kinase superfamily protein (.1.2) AT5G56890 231 / 2e-65 Protein kinase superfamily protein (.1) AT1G61860 217 / 4e-65 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028518 [exp] 860 / 0 AT5G37790 592 / 0.0 Protein kinase superfamily protein (.1) Lus10017631 [exp] 661 / 0 AT5G37790 601 / 0.0 Protein kinase superfamily protein (.1) Lus10033588 [exp] 653 / 0 AT5G37790 591 / 0.0 Protein kinase superfamily protein (.1) Lus10028661 [exp] 265 / 2e-79 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 265 / 2e-79 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 231 / 6e-69 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10024154 [exp] 234 / 1e-68 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 231 / 9e-68 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10006957 [exp] 221 / 3e-67 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G126500 [exp] 675 / 0 AT5G37790 658 / 0.0 Protein kinase superfamily protein (.1) Potri.004G089100 [exp] 665 / 0 AT5G37790 666 / 0.0 Protein kinase superfamily protein (.1) Potri.007G102400 [exp] 263 / 3e-79 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 259 / 2e-77 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G067000 [exp] 258 / 2e-77 AT5G63940 690 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 255 / 7e-76 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 248 / 5e-74 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 236 / 1e-69 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 238 / 4e-69 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.006G173700 [exp] 227 / 1e-66 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10009125 pacid=23150021 polypeptide=Lus10009125 locus=Lus10009125.g ID=Lus10009125.BGIv1.0 annot-version=v1.0 ATGGGAATCTTTCAGGACAGTCCCTGTTTTCTTCACTGCTCCACTTATTCACTTTCATCCTCTTCCTCTTCTTCTTCGTCGTCGTTTTCTTCCTTCCCTA TCTCCGTCGTTGATAACAACAATGAGACAGAGCAGCAGCAGCCGTCAAAACCACTTTTGACCAAAATGGTGTGGCTATTCGGACTGTCCTGTTTCCTCCC CGACGGCGAAGGAACGAATAAGAACGCCGGAGGAGGAGGAGAAAGTAGTAGTAGTAGTAATAATAATAATAATAATACGGAGAACCATAAGGCTTGGCTG TTGGCAGAGTCCGGCGGCGGCGCCGACGGCGGAGGTGCGGTGATCACTACGAGAGCAGGGGAACCCCAGTCGGTTCATTCATCCTTCAGGTTCAGCTTCT GCTCTCAGGTGGAGCTGGATTCCATGAACATATCTTCGGCGACAGTGCTGATGGTGAATCTGGACAATGGGGGTTTGGCTAAGGATCAGCTCGGGTGGAG AAGAATCCAGTCTCTGGAGAGGAGCATCTCCCCTGTCGCTAATTCCTTGATTCGGTTCCACTACAGCGAGATTCTCGCCGCCACCAGTAATTTCTCCCAA GGTAAAGTGTTGGGAAGGGGAGCTTTGAGCTATGTGTACAGGGGAAGAGTTGGGGTTTTGAGGACTTGTGTGGCGATAAAGAGGCTAGACAAAGAAGACA AGGAATCTTCCAAGGCATTCTGTAGAGAGTTGATGATTGCTAGCTCTCTTCACCACCAAAACATTGTCCCTCTTCTGGGTTTCTGCATTCATCCTGAGGA AGGCTTGTTCTTGGTCTACAAGTATGCCTCTGGTGGCAGCTTGGAGCACCACTTACATGAGAGGAAGAAGAAGAAGAAGAGAAGAGGAGTAAAGGGAAAT TCTTCAACACTTGCTTGGGCAGTGAGGTACAAGGTAGCTATTGGAGTTGCAGAAGCAATTGCATATTTGCACAGTGGGACTGAGAGATGTGTTGTCCACA GAGATATCAAGCCTTCGAACATACTCCTTTCTTCCAAGAACAACCCCAAGTTGTGTGATTTTGGGTTGGCTGCCTGGACTTCTTCACCTTGTGTACCCTT CCTTTGCAAGACAGTCAAGGGAACATTTGGTTACTTGGCTCCTGAGTATTTCCAGCACGGCAAGGTATCAGACAAGACTGATGTATATGCTTTCGGAGTG GTCCTCCTTGAACTAATCACCGGAAGAAAACCAATAGAAGCAATTCGCCCGCCGGGAGAAGAGAATTTAGTCCAATGGGCGAAACCGCTGCTGGAGAAAG GCAAAGGAGCGATCGAGGAGCTGCTCGACCCGAGCATAACATGCACCTTGAGAAACGTGTCGCAGATAACTCAGATGATCCGAGCTGCTGCAGCGTGCGT GAGCAGCGAGGAATCTCATAGGCCGGGGATTAACGACATCGTTGTGATATTAAAAGGAGACGAAGAAACTACGTCATCATCATTGTCAGCAGGTACAGTG TTATCAAGTAGCAGCAGGAAGAGGTCCAACTTGGTTGCGGGGATCATAGATTGCTATCCTTATCAACTACAACATACAAACAGTGAGTTGAAGAGCCACT TGGCTTTGGCGATGCTCGGGGTTTCTGAGTTCGAGGATGATGATCACCTCTACTATCGATGA
AA sequence Show only first row Show all	>Lus10009125 pacid=23150021 polypeptide=Lus10009125 locus=Lus10009125.g ID=Lus10009125.BGIv1.0 annot-version=v1.0 MGIFQDSPCFLHCSTYSLSSSSSSSSSSFSSFPISVVDNNNETEQQQPSKPLLTKMVWLFGLSCFLPDGEGTNKNAGGGGESSSSSNNNNNNTENHKAWL LAESGGGADGGGAVITTRAGEPQSVHSSFRFSFCSQVELDSMNISSATVLMVNLDNGGLAKDQLGWRRIQSLERSISPVANSLIRFHYSEILAATSNFSQ GKVLGRGALSYVYRGRVGVLRTCVAIKRLDKEDKESSKAFCRELMIASSLHHQNIVPLLGFCIHPEEGLFLVYKYASGGSLEHHLHERKKKKKRRGVKGN SSTLAWAVRYKVAIGVAEAIAYLHSGTERCVVHRDIKPSNILLSSKNNPKLCDFGLAAWTSSPCVPFLCKTVKGTFGYLAPEYFQHGKVSDKTDVYAFGV VLLELITGRKPIEAIRPPGEENLVQWAKPLLEKGKGAIEELLDPSITCTLRNVSQITQMIRAAAACVSSEESHRPGINDIVVILKGDEETTSSSLSAGTV LSSSSRKRSNLVAGIIDCYPYQLQHTNSELKSHLALAMLGVSEFEDDDHLYYR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G37790			Protein kinase superfamily pro...		Lus10009125 [exp]	0	1
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	4.0	0.8172
AT5G62580			ARM repeat superfamily protein...		Lus10033129 [exp]	10.8	0.6716
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	35.6	0.6598
AT2G35470			unknown protein		Lus10035375 [exp]	49.7	0.6181
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10022038 [exp]	60.5	0.6121
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10025419 [exp]	75.7	0.6053
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10017007 [exp]	76.3	0.5773
AT5G47080		CKB1	casein kinase II beta chain 1...		Lus10042860 [exp]	80.6	0.5476
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10003292 [exp]	95.2	0.5549
AT2G25770			Polyketide cyclase/dehydrase a...		Lus10005477 [exp]	104.4	0.5551

Compare expression of checked genes

Lus10009125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.