Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G66400 145 / 2e-43 CML23 calmodulin like 23 (.1) AT5G37770 145 / 2e-43 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G18210 141 / 1e-41 Calcium-binding EF-hand family protein (.1.2) AT1G73630 138 / 9e-41 EF hand calcium-binding protein family (.1) AT1G24620 126 / 1e-35 EF hand calcium-binding protein family (.1) AT5G17470 120 / 7e-34 EF hand calcium-binding protein family (.1) AT2G43290 111 / 1e-29 MSS3 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) AT2G36180 107 / 7e-29 EF hand calcium-binding protein family (.1) AT3G07490 107 / 8e-29 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT3G59440 107 / 2e-28 Calcium-binding EF-hand family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028516 [exp] 204 / 7e-67 AT1G66400 118 / 4e-35 calmodulin like 23 (.1) Lus10018012 [exp] 141 / 2e-41 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 133 / 1e-38 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10004330 [exp] 132 / 2e-38 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 131 / 6e-38 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10031345 [exp] 130 / 2e-37 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10038088 [exp] 115 / 1e-30 AT3G07490 150 / 7e-46 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10006644 [exp] 114 / 2e-30 AT3G07490 148 / 3e-45 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10019863 [exp] 111 / 7e-30 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G089400 [exp] 215 / 8e-71 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.017G126200 [exp] 206 / 3e-67 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.012G048200 [exp] 138 / 1e-40 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.008G134300 [exp] 139 / 2e-40 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.015G039500 [exp] 138 / 2e-40 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.010G107100 [exp] 137 / 9e-40 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.014G070700 [exp] 119 / 1e-32 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.018G127100 [exp] 111 / 2e-29 AT3G07490 132 / 6e-39 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G239100 [exp] 108 / 2e-29 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.017G029700 [exp] 108 / 2e-28 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10009127 pacid=23150071 polypeptide=Lus10009127 locus=Lus10009127.g ID=Lus10009127.BGIv1.0 annot-version=v1.0 ATGGCGAAACAGAGCGAAGCTGCTGCGTCTCCTCCGATAGTCACCGATACCACGTCCCAGATCCGTCAAATCTTCGACAAGTTCGACAAGAACGGCGACG GGAAGATCTCCTGCTCGGAGGTAGTCGACAGCCTGAAGGAGCTCGGCACCGCCGTCACTCCAGCGGAGGTGGGGTGCATGATTAAGGAGTTCGACAAGGA CGGCGACGGCTACATTGACCCGGACGAGTTCGTCGGGTTCATCCAGAGCGGCGGATTCGAAGACTCTGAGTCCGTCGACGGGAGTAGCCGCCGCGGAGGA GGAGCTGCAGGGAGGAAGGAGCTGAAGGACGCTTTCGATCTGTACGACATGGACAAGAACGGGCTGATTTCAGCTAACGAGCTACACGCGGTGATGAAGA TGCTGGGGCTGAAATGCAGCATGGGCGAGTGCAAGAAGATGATCCGGCAGGTGGACCAGGACGGCGATGGCAGCGTCAACTTTGAGGAGTTCAGGAAGAT GATGTCTACCGGAAACCGCGCTCCGGCAGCTTGTTCCTGCGGACACCAGCTGGTGGAGAGACTGGAACTCCATCCAAAATATTTGGGGGATTACTCACAT TGGCGAGTTGCCTCCTGCAAACTCGCTAGATGTTCGAAATCGGTCTCCCTTTTCGAAGACTTGGCCAGAGGCCGATTTCCAGCTCGTAAGTCTCTCTTCG ACCGGCTTCGGACAACAGCTAATTGCTCCACCACAGGCGTAGCTCCATGCGCCAGAATTTCCCCTGAAAAAGTAGTGTTTGTAGCTCCTCACGATCCTCC AGGTAGTTTGTCGCCGGTCAGGTTAGCATGA
AA sequence Show only first row Show all	>Lus10009127 pacid=23150071 polypeptide=Lus10009127 locus=Lus10009127.g ID=Lus10009127.BGIv1.0 annot-version=v1.0 MAKQSEAAASPPIVTDTTSQIRQIFDKFDKNGDGKISCSEVVDSLKELGTAVTPAEVGCMIKEFDKDGDGYIDPDEFVGFIQSGGFEDSESVDGSSRRGG GAAGRKELKDAFDLYDMDKNGLISANELHAVMKMLGLKCSMGECKKMIRQVDQDGDGSVNFEEFRKMMSTGNRAPAACSCGHQLVERLELHPKYLGDYSH WRVASCKLARCSKSVSLFEDLARGRFPARKSLFDRLRTTANCSTTGVAPCARISPEKVVFVAPHDPPGSLSPVRLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10009127 [exp]	0	1
AT1G66400		CML23	calmodulin like 23 (.1)		Lus10028516 [exp]	1.7	0.9023
AT2G43290		MSS3	multicopy suppressors of snf4 ...		Lus10027701 [exp]	4.9	0.8798
AT2G01300			unknown protein		Lus10009104 [exp]	8.1	0.8451
AT5G51570			SPFH/Band 7/PHB domain-contain...		Lus10015032 [exp]	13.3	0.8401
AT1G18740			Protein of unknown function (D...		Lus10028578 [exp]	16.4	0.8310
AT3G21570			unknown protein		Lus10012773 [exp]	16.4	0.8299
AT5G01710			methyltransferases (.1)		Lus10014232 [exp]	17.3	0.8295
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	20.0	0.7985
AT1G55270			Galactose oxidase/kelch repeat...		Lus10019425 [exp]	20.3	0.7732
AT3G21570			unknown protein		Lus10034002 [exp]	23.4	0.8196

Compare expression of checked genes

Lus10009127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.