Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24200 190 / 2e-49 Transcription elongation factor (TFIIS) family protein (.1) AT3G48050 71 / 5e-12 SUO 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) AT3G48060 69 / 2e-11 BAH domain ;TFIIS helical bundle-like domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028515 [exp] 1659 / 0 AT4G24200 197 / 7e-52 Transcription elongation factor (TFIIS) family protein (.1) Lus10033586 [exp] 724 / 0 AT4G24200 147 / 5e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10017630 [exp] 671 / 0 AT4G24200 149 / 2e-36 Transcription elongation factor (TFIIS) family protein (.1) Lus10033410 [exp] 77 / 5e-14 AT3G48060 726 / 0.0 BAH domain ;TFIIS helical bundle-like domain (.1) Lus10042137 [exp] 76 / 2e-13 AT3G48050 764 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G020000 [exp] 659 / 0 AT4G24200 254 / 2e-70 Transcription elongation factor (TFIIS) family protein (.1) Potri.005G241400 [exp] 645 / 0 AT4G24200 417 / 2e-129 Transcription elongation factor (TFIIS) family protein (.1) Potri.012G077700 [exp] 80 / 6e-15 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072800 [exp] 77 / 6e-14 AT3G48050 1343 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.012G077500 [exp] 74 / 3e-13 AT3G48050 1375 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2) Potri.015G072900 [exp] 74 / 7e-13 AT3G48050 1311 / 0.0 'shuttle' in chinese, BAH domain ;TFIIS helical bundle-like domain (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009128 pacid=23150007 polypeptide=Lus10009128 locus=Lus10009128.g ID=Lus10009128.BGIv1.0 annot-version=v1.0 ATGACGCTGGAAGATTTCTTTACCCTAACTGAGATGAAAGATGGGCTCACAGTCCCTTCTCGAGTACATGAGCTGCTTGCTGTAATGCAGAAGGAGAAAG ATTGTATCGTTAAGAACATCGGTGACGCACCTAGACAGTGGGCGGCAGTTTGCAGTACAATTGCTGCTACCGAGAATAGAGATTGTCTTGATCTTTTTAT TCAACTAGATGGACTCTGGTTCGTTGATAGATGGTTAAAGGAGGCCCTAAATAACAGCAGTGGTACAAGTGATGGTTTTATAGAAGAATCAATCGCTGCA CTGTTAAGAGCAATAGAAAAGCTGCAAATAAACAAAACTAGGTCTCTTTCTTCAGGGATCTGGTCATCAGTCAATAATCTTATTCATCACTCTAGCTCCC GCATTCAAGATAGAGCAAGAGCACTTTTTGATTCTTGGAAGAAGGATGGCGATAGTCATGAATCTAGGAATGTTCAAGGGGTAGATGTTGTTGATGTGGT TTCTGGTGATATTGAGACAGCTAAGAACATTCTTGTGAAAGGAAGTGATACCAACAAACAATGTACAGCTGAGCCTTTTAGTACAGGAGATACACGATCA AGAAGCTTAAGCTGTCCTGAATCGGAGAGAGATCAAAATGTAGAATCTCATAACAGTAAGCCCGGAACACATGCAGGCTTAGACCATGGAAACTGGGGAG ACAGATCCGTGACTAATTCTGCTATGATCAATTGCAACCAAGGGAGCACTCCCTTGAAAGAGAAGACCTCCGTAGATTATGTAGACGGAGCCGCCTCATC AGAGACTCGTACTTCTCTAGCTCAAAATGGACAAGGTACTGCACCTGAGTCAGATGTCATAAATAATTCAAGCAGCTTATGCGATAAAGCTTCCTCAATT GTTTCAGCTTCTACTAAACTGGTATCTGGAATAAACTCAACATCTGATGCTGCTAATATTCAAGGGACTAAGCCTGATCCTGGTTTTCAAAAGAACTTTA GTGCCCAGGAGGGTGATCAATCTCGTAGTGTTTCTGTATCAGATGGTGACGGAGCAGGTGTAGTGGCCCCTGAAGTTTCATCTGATAATAAACTTGATAC CAGTGGCTGTAATCCATCGATGTCCAAATTAGTTCCTAAAGATGATGAATGTCGTGATGTTTGGAATATTATAGGCGATGAGAAAGGATCGACGAAATCT GGAGTTTTGAAGACTATGCCTAGGTTGGAAGATACTGAGCCTAATGAGGATGAAAGCAAGCACAGTAGTGATGGAGATGAGGAATTGGGAGAAAGCTACA ATTTCTCTAAATCAGTATTTGACCCCCAGAGTTCTTTCTCGGCAAATAGAAGGAAGCCTGATTTTGAGCTCGAGTATGGTATAGTTGATGCTTTAGAAGT TGCGCGACAAGTTGCGCAGGAAGTTGAGAGGGAAGTAGAAGATTATAGAGAACCATCCGGCAGTTCTTCCGAAAAGATTACAGGGAGTAATAATAAGCAG CCTGAGAGCCCAGATTCCATAAGTGAGAAACAAACTGAATCAGGGGAGTTCCGAGCAGAAGATTTGGCATCATCAGACAATCAGGCTATACAAGCCTCAA CTGATGAAGGCATGCAGATCGATGATTCTAACCAGGATAATAAAACAGAGAAACATAATATTGAGTTAGAGTCCTCTCAGGTGACTGAAGCAGCTCGAGA ACCCGAAGTTACAGAGAAAGGATTTTGTGGTTTTGATCTTAATGAAGAAGTCTCTTCAGATGATGCTGATCAACCTGCAGAGTGGGTCTCTGCACCGATT TCTATCGTTTCAGTCTCGAGACCCGCTGCAACTTCAGCATCACCTGCAGCACCATTGCACTTTAAAGGAACTCTTGGGTGGAAGGGATCGGCAGCTACTA GTGCTTTTCGTCCAGCTTCTCCACGAAAGGTTCTCGACATTGATCTGAATCTCAGTGAGAATAATGGAGATGAGAAAGGAGGAGTGGGTTTAATGTTGAG AAGGCAACCCACGATGTTACCCTTCTTCCAACGTGGGGAGTCTTCGCTGAATCCATGTACAAGTAAATCAGAGAGACTCAACTTGGATTTAAATCTCACA AGCGATGAGGGCGAGATCACACCAGCCTCAGCCTCGAAGAGTGAGGAAGGGGTCTTTTTCCTCCGGAACGGCCATCATCGCAGTCCTTCTCCTGCCTCTT CATCCTCATCTCTGCGGCCATCATTGAAGAACTTTGATTTGAATGATAGGCCACTCTTCCATAATGATACTTCAGATCACAGATTATATCATGGCGAGTC TTCTTCTCAAAGTTTCAATTTTCACGGAGGAGGATCAAGACAAGGTGATCCCGTCATTTCCATCATGGGAGCTAAAGTCGAAGTCGGCAGAAAGGACTTC TTCCCTCAGACTCCATCCTTGTCTACTATACCGAACGGTAAGCCTTCAGATCCTGCATTTGATACTAATATGGCAAGAATAGGAGTTATGGGGATGATTC CAACGGTACCCTATGCGCCTTCTCCTGTCTTTGGTTACAATGGATACGCTGCAGCACCACCCATGTCTTCGATGTATGGGCCGGGCGGTCCAATCCCATA TATGGTGGATTCAAGAGGCGCTCCTGTACTACCTCAAATGGTTAGTACTGCTCCATATTCTCAGCCACCATTCATCATGAACATGGGCGTTGCACCCCTC GGTTTAAATGGAGCAGGGCCATCGCGGACACATTTCGATCTGAACTCAGGTTTTCCGATTGAAGGAGGAAGCAATGGGGGTTTGAGGCAGTTCTTTGTGA CGAATCAACCAGCCAGGTCCTTTGAGGAGCATTTGAGGTCAAACCCACAACCTTCTTCCTCGAGTTCGGGAATGCCCGCTTCTGGAAAACGCAAAGAACC AGAAGGTGGATGGGAGCCTTATAACTCGTTACATTATAAGCAACCACAACAACCTCCTTGGAGATAA
AA sequence Show only first row Show all	>Lus10009128 pacid=23150007 polypeptide=Lus10009128 locus=Lus10009128.g ID=Lus10009128.BGIv1.0 annot-version=v1.0 MTLEDFFTLTEMKDGLTVPSRVHELLAVMQKEKDCIVKNIGDAPRQWAAVCSTIAATENRDCLDLFIQLDGLWFVDRWLKEALNNSSGTSDGFIEESIAA LLRAIEKLQINKTRSLSSGIWSSVNNLIHHSSSRIQDRARALFDSWKKDGDSHESRNVQGVDVVDVVSGDIETAKNILVKGSDTNKQCTAEPFSTGDTRS RSLSCPESERDQNVESHNSKPGTHAGLDHGNWGDRSVTNSAMINCNQGSTPLKEKTSVDYVDGAASSETRTSLAQNGQGTAPESDVINNSSSLCDKASSI VSASTKLVSGINSTSDAANIQGTKPDPGFQKNFSAQEGDQSRSVSVSDGDGAGVVAPEVSSDNKLDTSGCNPSMSKLVPKDDECRDVWNIIGDEKGSTKS GVLKTMPRLEDTEPNEDESKHSSDGDEELGESYNFSKSVFDPQSSFSANRRKPDFELEYGIVDALEVARQVAQEVEREVEDYREPSGSSSEKITGSNNKQ PESPDSISEKQTESGEFRAEDLASSDNQAIQASTDEGMQIDDSNQDNKTEKHNIELESSQVTEAAREPEVTEKGFCGFDLNEEVSSDDADQPAEWVSAPI SIVSVSRPAATSASPAAPLHFKGTLGWKGSAATSAFRPASPRKVLDIDLNLSENNGDEKGGVGLMLRRQPTMLPFFQRGESSLNPCTSKSERLNLDLNLT SDEGEITPASASKSEEGVFFLRNGHHRSPSPASSSSSLRPSLKNFDLNDRPLFHNDTSDHRLYHGESSSQSFNFHGGGSRQGDPVISIMGAKVEVGRKDF FPQTPSLSTIPNGKPSDPAFDTNMARIGVMGMIPTVPYAPSPVFGYNGYAAAPPMSSMYGPGGPIPYMVDSRGAPVLPQMVSTAPYSQPPFIMNMGVAPL GLNGAGPSRTHFDLNSGFPIEGGSNGGLRQFFVTNQPARSFEEHLRSNPQPSSSSSGMPASGKRKEPEGGWEPYNSLHYKQPQQPPWR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24200			Transcription elongation facto...		Lus10009128 [exp]	0	1
AT3G18290		BTS, EMB2454	embryo defective 2454, BRUTUS,...		Lus10005111 [exp]	1.4	0.8690
AT1G13940			Plant protein of unknown funct...		Lus10026640 [exp]	4.0	0.8051
AT3G27700	C3HZnF		zinc finger (CCCH-type) family...		Lus10032139 [exp]	4.9	0.8790
AT5G61400			Pentatricopeptide repeat (PPR)...		Lus10019080 [exp]	6.5	0.8336
AT4G34100			RING/U-box superfamily protein...		Lus10019839 [exp]	6.5	0.7992
AT1G72390			unknown protein		Lus10013169 [exp]	6.9	0.8636
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10016911 [exp]	8.5	0.7898
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10037771 [exp]	9.3	0.7959
AT2G44520		COX10	cytochrome c oxidase 10 (.1)		Lus10019514 [exp]	9.3	0.7456
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Lus10024723 [exp]	10.3	0.7719

Compare expression of checked genes

Lus10009128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.