Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70780 85 / 1e-21 unknown protein AT5G37730 76 / 6e-18 unknown protein AT1G23150 74 / 3e-17 unknown protein AT4G22758 46 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017628 [exp] 110 / 1e-31 AT5G37730 102 / 3e-28 unknown protein Lus10034416 [exp] 81 / 7e-20 AT1G70780 168 / 8e-55 unknown protein Lus10031920 [exp] 79 / 4e-19 AT1G70780 172 / 4e-56 unknown protein Lus10039287 [exp] 78 / 9e-19 AT1G70780 104 / 4e-29 unknown protein Lus10019143 [exp] 77 / 1e-18 AT1G70780 167 / 4e-54 unknown protein Lus10035084 [exp] 76 / 3e-18 AT1G70780 171 / 7e-56 unknown protein Lus10027525 [exp] 73 / 9e-17 AT1G70780 104 / 3e-29 unknown protein Lus10033584 [exp] 47 / 1e-07 AT5G37730 78 / 2e-19 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G110800 [exp] 86 / 5e-22 AT1G70780 188 / 9e-63 unknown protein Potri.008G131600 [exp] 83 / 1e-20 AT1G70780 183 / 2e-60 unknown protein Potri.017G125300 [exp] 81 / 5e-20 AT1G70780 109 / 2e-31 unknown protein Potri.004G089700 [exp] 79 / 5e-19 AT5G37730 108 / 1e-30 unknown protein Potri.004G188600 [exp] 55 / 1e-09 AT2G27830 160 / 5e-50 unknown protein Potri.003G116300 [exp] 48 / 2e-07 AT2G27830 125 / 2e-36 unknown protein Potri.009G149200 [exp] 47 / 6e-07 AT2G27830 183 / 6e-59 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10009131 pacid=23150028 polypeptide=Lus10009131 locus=Lus10009131.g ID=Lus10009131.BGIv1.0 annot-version=v1.0 ATGCAGCATCAGAAAGTGATGGTGAATAGTCATAATAATAATAAGAAGATGATGATGAGAAAGAGTAAGAGTAATAAGATATTGGTGAGAGTGAACGTTG TTGGGAGTACTGGCCCAATAAAGGTGGTGGTGAACAAGGATGATTCCGTCGCCACCGTCGTCAACTCAGCCCTCAGAGCCTACGCCAAGCAAGGCAGGCT TCTTCCTAATTCCCCACTTTCCTCTAACAACACCCACTTCCTTCTCTACTCCTCCAAGTACGATGGTTTTACTGATTATTCTCAAGCTTTGAGTCCTGGG GAAGCAATAGGAAGTAGCGGGAGTAGGAACTTTGTGATGTGCAAGAAGCAGGCCCCAACGACTACTTCCGGCGTTAATAATATGTCACAGAAGTTGTCGT TAATAAGCAGTTTGAAGGCATGGCTTAACCGACATTTCACTAGTTTCAAGCTTTTATAA
AA sequence Show only first row Show all	>Lus10009131 pacid=23150028 polypeptide=Lus10009131 locus=Lus10009131.g ID=Lus10009131.BGIv1.0 annot-version=v1.0 MQHQKVMVNSHNNNKKMMMRKSKSNKILVRVNVVGSTGPIKVVVNKDDSVATVVNSALRAYAKQGRLLPNSPLSSNNTHFLLYSSKYDGFTDYSQALSPG EAIGSSGSRNFVMCKKQAPTTTSGVNNMSQKLSLISSLKAWLNRHFTSFKLL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G70780			unknown protein		Lus10009131 [exp]	0	1
AT3G50930		BCS1	cytochrome BC1 synthesis (.1)		Lus10037004 [exp]	3.5	0.8078
					Lus10008153 [exp]	5.2	0.8400
AT4G29035			Plant self-incompatibility pro...		Lus10011895 [exp]	7.7	0.8291
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	9.8	0.8187
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	10.6	0.7789
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Lus10023022 [exp]	11.7	0.8097
AT5G54010			UDP-Glycosyltransferase superf...		Lus10008453 [exp]	13.0	0.8087
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	16.3	0.8010
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	17.4	0.8010
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	18.5	0.8010

Compare expression of checked genes

Lus10009131 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.