Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04040 464 / 8e-161 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04080 453 / 1e-156 MATE efflux family protein (.1) AT2G04100 447 / 5e-154 MATE efflux family protein (.1) AT2G04050 443 / 2e-152 MATE efflux family protein (.1) AT2G04070 441 / 9e-152 MATE efflux family protein (.1) AT2G04090 439 / 5e-151 MATE efflux family protein (.1) AT1G15160 432 / 6e-148 MATE efflux family protein (.1) AT1G71140 427 / 2e-146 MATE efflux family protein (.1) AT1G15150 425 / 2e-145 MATE efflux family protein (.1) AT1G15170 424 / 5e-145 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018136 [exp] 464 / 2e-160 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10008911 [exp] 461 / 2e-159 AT1G71140 430 / 1e-147 MATE efflux family protein (.1) Lus10042732 [exp] 459 / 7e-159 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 458 / 4e-158 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10009140 [exp] 454 / 1e-156 AT1G64820 560 / 0.0 MATE efflux family protein (.1) Lus10028504 [exp] 446 / 2e-153 AT1G64820 556 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 460 / 3e-153 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 453 / 2e-150 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 427 / 1e-146 AT1G15170 524 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G093400 [exp] 579 / 0 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.004G094700 [exp] 544 / 0 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.010G116900 [exp] 488 / 3e-170 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.017G120400 [exp] 473 / 2e-164 AT2G04100 508 / 3e-178 MATE efflux family protein (.1) Potri.010G117000 [exp] 469 / 2e-162 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 462 / 4e-160 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.017G120500 [exp] 462 / 5e-160 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.019G075800 [exp] 447 / 5e-155 AT1G71140 407 / 2e-139 MATE efflux family protein (.1) Potri.004G094900 [exp] 444 / 7e-153 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120600 [exp] 437 / 3e-150 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10009132 pacid=23150048 polypeptide=Lus10009132 locus=Lus10009132.g ID=Lus10009132.BGIv1.0 annot-version=v1.0 ATGGAAGATCCGACAACGAGCAAGGCAGAGATGTTGGGCGACGAAGCGGCAGCGGCGTCGCAGGAGGAGCAGCGTACGAGGAACATGTTTGTGGAGGAGG TGAAGAAGGAATGCAGAATAGCAGCTCCAATGGTGGCAGTTGCTCTTCTTCAGTATCTTCTTCAGGTTGTATCAATGGTGATGGTGGGCCATCTCGGCAC TCTGCCTCTTTCCAGCGTCGCCATTGCTACTTCTCTAACTAACGTCACCGGTTTCAGCCTTCTTTCAGGAATGGCGGGTGGACTGGAAACTCTATGCGGC CAAGCATACGGAGCAAAACAATACAAAAACCTCGCAACATACACCTACTCAGCAATCATCACTCTCCTAATCCTCTGCCCACCAATCACTCTCCTCTGGT TTTTCATAGACAAACTACTCATTTCACTCGGTCAAGACCCATCAATTTCCCACCAAGCTCGCAACTTCTCAATGTGGCTGATCCCGGCGCTCTTCGCCTC CGCAATTCTGAAACCGTTGACCCGATTCCTCCAAACCCAGTCCGTGATTCTCCCCATGCTCATCAGCTCTCTGTTAGTGCTCTGTTTCCACGTCATCTGT TGCTGGACCCTTGTTTACAGGCTGGAAATCGGGTACGTCGGAGCAGCCATGGCGCTTAGCTTCTCCACGTGGCTCAATGTCGTTTTGCTCGCGTGTTACG TCTTTTTTTCTCCCGTCTGTGAGAGAACAAAAGGAGCGTTGACGAGAGGCGCGTTTGTTGGCGTTGGACAGTTCTTTTGGCTTGGACTCTCCTCTGCTGT CATGGTCTGTCTGAAATGGTGGTCGATGGAATTGCTGACTCTGCTTTCTGGGTTTATGTCCAATCCAAAGCTGGAGACCTCTGTTCTTTCTATATGCTTA TCAATATCCACTCTGCACTTCACCATACCCTACGGATTCGGAGCTGCTGTAAGCACGAGGGTGTCGAACGAGCTAGGAGGTGGGAGGCCACAATCCGCCA GGATGGCAGTCCACGTGGCATTATCTCTTGCATTTACAGAATCAGTCATTGCAACGACTAACCTCTTCTTCTGTCGAAGATTCCTGGGATACGCTTTCTC CAAAGATACCAATGTTCTGCACTACGTGGCCACGATGATTCCTTTCCTCTGCCTCTCGATTCTCACAGACAGTTTCCAGGGCGTGCTTTCCGGAGTTGCG AGAGGCTGCGGATGGCAGAAAGTTGGGGCTTACATAAATCTTGGGTCGTTTTATTTGGTTGGGCTTCCGGTGGGGTGCATGCTGGGCTTTGTGGCCCATT TAGAAGGGAAAGGCCTCTGGATTGGGATAGTGGCTGGATCCTTAGTCCAGACCGCTTCGCTCTCTGTATTCACCGCTTCCTTGGACTGGAGAAAACAGGT GATTAAGGCAGAGGAGAGGATCCGTTCTAAATCAACGGCGGAGAACGACCGGAACTGA
AA sequence Show only first row Show all	>Lus10009132 pacid=23150048 polypeptide=Lus10009132 locus=Lus10009132.g ID=Lus10009132.BGIv1.0 annot-version=v1.0 MEDPTTSKAEMLGDEAAAASQEEQRTRNMFVEEVKKECRIAAPMVAVALLQYLLQVVSMVMVGHLGTLPLSSVAIATSLTNVTGFSLLSGMAGGLETLCG QAYGAKQYKNLATYTYSAIITLLILCPPITLLWFFIDKLLISLGQDPSISHQARNFSMWLIPALFASAILKPLTRFLQTQSVILPMLISSLLVLCFHVIC CWTLVYRLEIGYVGAAMALSFSTWLNVVLLACYVFFSPVCERTKGALTRGAFVGVGQFFWLGLSSAVMVCLKWWSMELLTLLSGFMSNPKLETSVLSICL SISTLHFTIPYGFGAAVSTRVSNELGGGRPQSARMAVHVALSLAFTESVIATTNLFFCRRFLGYAFSKDTNVLHYVATMIPFLCLSILTDSFQGVLSGVA RGCGWQKVGAYINLGSFYLVGLPVGCMLGFVAHLEGKGLWIGIVAGSLVQTASLSVFTASLDWRKQVIKAEERIRSKSTAENDRN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G04040		ATDTX1	detoxification 1, MATE efflux ...		Lus10009132 [exp]	0	1
AT4G05030			Copper transport protein famil...		Lus10039093 [exp]	1.4	0.8853
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10028896 [exp]	6.9	0.8764
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Lus10031808 [exp]	7.2	0.8831
					Lus10021874 [exp]	9.3	0.8439
AT5G09280			Pectin lyase-like superfamily ...		Lus10031867 [exp]	9.6	0.8771
					Lus10033178 [exp]	11.1	0.8771
AT3G48950			Pectin lyase-like superfamily ...		Lus10027516 [exp]	12.3	0.7661
					Lus10010826 [exp]	12.4	0.8771
AT4G34131		UGT73B3	UDP-glucosyl transferase 73B3 ...		Lus10014079 [exp]	13.0	0.6648
					Lus10011629 [exp]	13.6	0.8771

Compare expression of checked genes

Lus10009132 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.