Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03450 116 / 2e-28 GRAS RGL2 RGA-like 2 (.1) AT1G66350 113 / 2e-27 GRAS RGL1 RGA-like 1 (.1) AT2G01570 113 / 3e-27 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 111 / 1e-26 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT5G17490 93 / 2e-20 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017626 [exp] 193 / 5e-56 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033583 [exp] 191 / 2e-55 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10017758 [exp] 78 / 3e-15 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10033060 [exp] 77 / 5e-15 AT2G01570 247 / 1e-76 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Lus10028511 [exp] 0 / 1 AT5G17490 527 / 0.0 RGA-like protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125200 [exp] 192 / 2e-55 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 186 / 4e-53 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.010G110700 [exp] 145 / 2e-38 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.008G131700 [exp] 143 / 8e-38 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12041 [flax] [poplar] DELLA Transcriptional regulator DELLA protein N terminal
Representative CDS sequence Show only first row Show all	>Lus10009134 pacid=23150010 polypeptide=Lus10009134 locus=Lus10009134.g ID=Lus10009134.BGIv1.0 annot-version=v1.0 ATGAAAAGGGATCATCACCAGGCCAGCTGCGGCTACGGCGGCGGAAGAGTCGACGACTCTGCTGCTGCTGCATCCGCATCAATGGCGGCTCCCCCAGCTG CAGGGAAAGGGAAGCTCTGGGAAGACGACCAGGACGCCGGCGGGATGGATGAATTGCTTGCCGTTCTGGGTTACAAGGTCAGGGCGTCCGACATGGCTGA CGTGGCTCAGAAGCTCGAGCAGCTGGAGATGGTAATGGTGGCGGCGCAGGACGATGGGATTTCTCACCTCGCTTCCGATACTGTTCACTACAACCCGTCC GATCTATCCGCCTGGTACGACAGTATGCTCTCGGAGCTCAACAACACGCCTTCTGCCCCCCTCGACTCCACTTCCTTGGTCTCCGGCGGCGCCGGAGGTT CTTCCTCCATGGATTTTTCCTCCGCCTCGCAGCCCCACCAGTCTTCTGCTATCTTCAGAGACGACTCCGAGTACGATCTTAGAGCTATCCCTGGCGTTGC TGCTTTCCCACAAGCTGAATCTGAGAATGATAACAGCAGAAAGCGCATCAAAACTTCCCCTGGAGGTTCTTCTAACTCCGCTCCCTCTCCTCCGTCGTCG GCGATTACAGCTGGCTCTTCCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTGATAATCGACTCGCAGGGGGCCGGA GTCCGGCTCGTGCACACGCTTTTGGCCTGCGCGGAGGCGGTTCAACAGGACAACGTGAAGCTCGCCGACGCACTCGTCAAGCACACCGGATTGCTCGCGG CGTCTCAGACGGGATCCATGAGGAAAGTCGCTACCTACTTCGCCGAAGCTCTTGCTCGCCGTATTTACAAGATTTACCCGCAAGACTGTCTAGAACCTTC TTATTCGGATACCTTAGAGATGCACTTCTACGAGACTTGCCCTTACCTGAAATTCGCCCATTTCACTGCCAATCAAGCGATTCTGGAAGCCTTCGCAACC GCCGATCGGGTTCATGTAATCGATTTCGGGCTCAAGCAAGGGATGCAGTGGCCGGCTCTGATGCAAGCTCTGGCATTACGGCCGGGCGGACCGCCGGCTT TCCGATTGACCGGAATCGGGCCGCCTCAGCCAAACAACGCTGA
AA sequence Show only first row Show all	>Lus10009134 pacid=23150010 polypeptide=Lus10009134 locus=Lus10009134.g ID=Lus10009134.BGIv1.0 annot-version=v1.0 MKRDHHQASCGYGGGRVDDSAAAASASMAAPPAAGKGKLWEDDQDAGGMDELLAVLGYKVRASDMADVAQKLEQLEMVMVAAQDDGISHLASDTVHYNPS DLSAWYDSMLSELNNTPSAPLDSTSLVSGGAGGSSSMDFSSASQPHQSSAIFRDDSEYDLRAIPGVAAFPQAESENDNSRKRIKTSPGGSSNSAPSPPSS AITAGSSSXXXXXXXXXXXXXXXXGDNRLAGGRSPARAHAFGLRGGGSTGQREARRRTRQAHRIARGVSDGIHEESRYLLRRSSCSPYLQDLPARLSRTF LFGYLRDALLRDLPLPEIRPFHCQSSDSGSLRNRRSGSCNRFRAQARDAVAGSDASSGITAGRTAGFPIDRNRAASAKQR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Lus10009134 [exp]	0	1
AT5G17490	GRAS	AtRGL3, RGL3	RGA-like protein 3 (.1)		Lus10028511 [exp]	1.0	0.8809
AT5G44670			Domain of unknown function (DU...		Lus10008076 [exp]	2.4	0.8721
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10025395 [exp]	3.9	0.8562
AT4G18710		DWF12, UCU1, BI...	ULTRACURVATA 1, DWARF 12, BRAS...		Lus10015274 [exp]	4.9	0.8568
AT3G57890			Tubulin binding cofactor C dom...		Lus10016279 [exp]	7.9	0.8380
AT3G27320			alpha/beta-Hydrolases superfam...		Lus10022326 [exp]	8.3	0.8589
AT1G06780		GAUT6	galacturonosyltransferase 6 (....		Lus10018773 [exp]	9.4	0.8382
AT5G03340			ATPase, AAA-type, CDC48 protei...		Lus10016123 [exp]	10.0	0.8334
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Lus10006364 [exp]	13.5	0.8383
AT3G52500			Eukaryotic aspartyl protease f...		Lus10021293 [exp]	15.9	0.8166

Compare expression of checked genes

Lus10009134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.