Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16710 364 / 1e-126 DHAR3 dehydroascorbate reductase 1 (.1) AT1G19570 278 / 1e-93 DHAR5, DHAR1, ATDHAR1 DEHYDROASCORBATE REDUCTASE 5, dehydroascorbate reductase (.1.2) AT1G75270 271 / 6e-91 DHAR2 dehydroascorbate reductase 2 (.1) AT1G19550 171 / 2e-52 Glutathione S-transferase family protein (.1) AT5G02790 57 / 3e-09 GSTL3 Glutathione transferase L3, Glutathione S-transferase family protein (.1) AT5G02780 54 / 3e-08 GSTL1 glutathione transferase lambda 1 (.1.2) AT3G55040 54 / 6e-08 GSTL2 glutathione transferase lambda 2 (.1) AT2G29440 42 / 0.0004 GST24, ATGSTU6 GLUTATHIONE S-TRANSFERASE 24, glutathione S-transferase tau 6 (.1) AT1G78320 41 / 0.0007 ATGSTU23 glutathione S-transferase TAU 23 (.1) AT5G42150 41 / 0.0007 Glutathione S-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028510 [exp] 521 / 0 AT5G16710 352 / 2e-120 dehydroascorbate reductase 1 (.1) Lus10023441 [exp] 274 / 9e-92 AT1G75270 327 / 3e-115 dehydroascorbate reductase 2 (.1) Lus10023442 [exp] 265 / 4e-88 AT1G75270 317 / 5e-111 dehydroascorbate reductase 2 (.1) Lus10040320 [exp] 273 / 7e-88 AT1G75270 320 / 4e-108 dehydroascorbate reductase 2 (.1) Lus10019895 [exp] 62 / 4e-10 AT5G12130 399 / 6e-135 PIGMENT DEFECTIVE 149, TELLURITE RESISTANCE C, integral membrane TerC family protein (.1) Lus10040347 [exp] 57 / 6e-09 AT3G55040 290 / 8e-98 glutathione transferase lambda 2 (.1) Lus10005367 [exp] 50 / 5e-07 AT2G02390 284 / 4e-98 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10020519 [exp] 50 / 5e-07 AT2G02390 283 / 2e-97 GLUTATHIONE S-TRANSFERASE 18, glutathione S-transferase zeta 1 (.1.2.3) Lus10026199 [exp] 51 / 1e-06 AT1G17160 496 / 8e-173 pfkB-like carbohydrate kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G125100 [exp] 395 / 1e-138 AT5G16710 389 / 4e-138 dehydroascorbate reductase 1 (.1) Potri.008G049300 [exp] 294 / 8e-100 AT1G75270 340 / 2e-120 dehydroascorbate reductase 2 (.1) Potri.010G211600 [exp] 223 / 7e-73 AT1G75270 253 / 5e-87 dehydroascorbate reductase 2 (.1) Potri.008G046800 [exp] 59 / 1e-09 AT3G55040 318 / 4e-109 glutathione transferase lambda 2 (.1) Potri.006G133500 [exp] 59 / 1e-09 AT5G02790 325 / 1e-113 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.016G083500 [exp] 54 / 4e-08 AT5G02790 340 / 2e-119 Glutathione transferase L3, Glutathione S-transferase family protein (.1) Potri.006G024200 [exp] 48 / 3e-06 AT2G29420 188 / 4e-60 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.010G061600 [exp] 46 / 2e-05 AT2G29420 172 / 7e-54 GLUTATHIONE S-TRANSFERASE 25, glutathione S-transferase tau 7 (.1) Potri.011G114000 [exp] 45 / 4e-05 AT1G17180 265 / 2e-90 glutathione S-transferase TAU 25 (.1) Potri.011G113400 [exp] 44 / 4e-05 AT1G17170 231 / 6e-78 Arabidopsis thaliana Glutathione S-transferase \(class tau\) 24, glutathione S-transferase TAU 24 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF02798 [flax] [poplar] GST_N Glutathione S-transferase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10009135 pacid=23150055 polypeptide=Lus10009135 locus=Lus10009135.g ID=Lus10009135.BGIv1.0 annot-version=v1.0 ATGTCGACTGCCAGAATCCAGCCAGCGGTGGCCGCCGTAGCTGCTTCTGCTCTCTCCTCCACCGTAAAATACAGCAGCTTCACTTTCAATTGTCCTTCAT CCACCGTCTTTGCCAGACGCCCCAGCATTCGGAGAACCCTCACATTTGCTATGTCCACCAGTGTGTCAAACCCTCTCGAAATCTGCGTGAAGGCCTCCAT CACTCAGCCAACCAAGCTCGGAGACTGCCCATTCTGCCAGAGGGTGTTGCTAACAATGGAGGAAAAGCGTGTACCTTATGACATGAAGTTGGTAGATTTG AATAACAAGCCAGAATGGTTCTTGAGGCTAAGTCCAGAAGGTAAAGTCCCTGTTGTAAATCTTGAGGATAAATGGGTTCCGGATTCGGATGTAATTACTC AGTCGCTGGAAGAGAAATTCCCTGATCCACCATTGGCCACACCACCTGAGAAATCTTCTGTCGGCTCAAAGATATTCTCCACCTTTATCGGATTTCTTAA AAGCAAAGACCCTGCAGATGGAACAGAGCAGGCGTTGCTGAGTGAGCTAAGTTCTTTTGACGATTATATAAAACAAAATGGTCCTTACATCAACGGGGAA AAGGTGTCGGCGGCAGATCTGTCTCTAGGACCAAAGCTGTACCATCTGGAGATAGCGTTGGTTCATTATAAAAATTGGTCAGTTCCAGAGTCGTTGCCTC ACGTCAAGTCGTACATGCAGACGATTTTCTCCATGGATTCCTTCGTTAAAACGCGTGCACTCCAGGAAGACGTTATTGCTGGTTGGCGGCCGAAAGCCAA CTGTCCAGGGCAAGTTCCCTTTACCCTTGTGCATGGAACTGTTTGTTGTTGCACTTGCATATGTATATATGTTGATGATACTGGAGTTGGATCCGGAGAC TTGACGTTCCAAGGCGAGTGGCGTTCTTTCTCTGGTTGGTTTGCAGAGATGGCTCAAGTGCTGCAATGGGAGGGGTTCTTCGAGAGGAGAATGGCCTTTG GATCGGTGGATTTGCTAATTGGGCCGGCACTCAATCGATTCTGCAGACTGAACTCTACAGCTATTAGGAAAGAGTATTGCAATGAAGCCTAG
AA sequence Show only first row Show all	>Lus10009135 pacid=23150055 polypeptide=Lus10009135 locus=Lus10009135.g ID=Lus10009135.BGIv1.0 annot-version=v1.0 MSTARIQPAVAAVAASALSSTVKYSSFTFNCPSSTVFARRPSIRRTLTFAMSTSVSNPLEICVKASITQPTKLGDCPFCQRVLLTMEEKRVPYDMKLVDL NNKPEWFLRLSPEGKVPVVNLEDKWVPDSDVITQSLEEKFPDPPLATPPEKSSVGSKIFSTFIGFLKSKDPADGTEQALLSELSSFDDYIKQNGPYINGE KVSAADLSLGPKLYHLEIALVHYKNWSVPESLPHVKSYMQTIFSMDSFVKTRALQEDVIAGWRPKANCPGQVPFTLVHGTVCCCTCICIYVDDTGVGSGD LTFQGEWRSFSGWFAEMAQVLQWEGFFERRMAFGSVDLLIGPALNRFCRLNSTAIRKEYCNEA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16710		DHAR3	dehydroascorbate reductase 1 (...		Lus10009135 [exp]	0	1
AT2G37400			Tetratricopeptide repeat (TPR)...		Lus10025299 [exp]	1.0	0.9170
AT4G17600		LIL3:1	Chlorophyll A-B binding family...		Lus10011016 [exp]	2.4	0.8990
AT1G17100			SOUL heme-binding family prote...		Lus10041532 [exp]	2.8	0.9126
AT2G22360			DNAJ heat shock family protein...		Lus10023148 [exp]	3.2	0.8718
AT4G11350			Protein of unknown function (D...		Lus10036382 [exp]	3.7	0.8832
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10010909 [exp]	4.5	0.8976
AT2G28190		CZSOD2, CSD2	copper/zinc superoxide dismuta...		Lus10021410 [exp]	4.7	0.8708
AT5G17780			alpha/beta-Hydrolases superfam...		Lus10003871 [exp]	5.1	0.8699
AT5G19020		MEF18	mitochondrial editing factor ...		Lus10034022 [exp]	5.7	0.8577
AT2G15690			Tetratricopeptide repeat (TPR)...		Lus10008570 [exp]	6.0	0.8882

Compare expression of checked genes

Lus10009135 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.