Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18620 176 / 2e-55 Terpenoid synthases superfamily protein (.1) AT4G36810 174 / 3e-54 GGPS1 geranylgeranyl pyrophosphate synthase 1 (.1) AT3G20160 168 / 3e-52 Terpenoid synthases superfamily protein (.1) AT3G14510 166 / 6e-52 Polyprenyl synthetase family protein (.1) AT3G14530 164 / 3e-50 Terpenoid synthases superfamily protein (.1) AT3G14550 159 / 1e-48 GGPS3 geranylgeranyl pyrophosphate synthase 3 (.1) AT2G23800 157 / 2e-47 GGPS5, GGPS2 GERANYLGERANYL PYROPHOSPHATE SYNTHASE 5, geranylgeranyl pyrophosphate synthase 2 (.1) AT2G18640 154 / 1e-46 GGPS4 geranylgeranyl pyrophosphate synthase 4 (.1) AT3G29430 147 / 5e-44 Terpenoid synthases superfamily protein (.1) AT3G32040 146 / 1e-43 Terpenoid synthases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028509 [exp] 261 / 4e-88 AT4G36810 437 / 2e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10033582 [exp] 255 / 4e-88 AT4G36810 305 / 6e-104 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017624 [exp] 254 / 2e-84 AT4G36810 439 / 5e-153 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10017625 [exp] 247 / 1e-82 AT4G36810 423 / 5e-148 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028508 [exp] 221 / 1e-72 AT4G36810 380 / 9e-132 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10028507 [exp] 204 / 6e-66 AT4G36810 375 / 2e-129 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10009138 [exp] 197 / 3e-63 AT4G36810 373 / 2e-128 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10022499 [exp] 184 / 4e-58 AT4G36810 491 / 8e-175 geranylgeranyl pyrophosphate synthase 1 (.1) Lus10016803 [exp] 183 / 1e-57 AT4G36810 488 / 2e-173 geranylgeranyl pyrophosphate synthase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G090600 [exp] 220 / 2e-72 AT4G36810 419 / 1e-146 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124600 [exp] 212 / 3e-69 AT4G36810 388 / 2e-134 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.017G124700 [exp] 199 / 3e-64 AT4G36810 413 / 1e-144 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.005G127100 [exp] 187 / 2e-59 AT4G36810 444 / 2e-156 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.007G031100 [exp] 181 / 4e-57 AT4G36810 467 / 1e-165 geranylgeranyl pyrophosphate synthase 1 (.1) Potri.004G179628 [exp] 78 / 9e-18 AT4G38460 403 / 3e-141 geranylgeranyl reductase (.1) Potri.009G139600 [exp] 76 / 6e-17 AT4G38460 389 / 7e-136 geranylgeranyl reductase (.1) Potri.001G380500 [exp] 70 / 7e-15 AT1G78510 597 / 0.0 solanesyl diphosphate synthase 1 (.1.2) Potri.011G099500 [exp] 65 / 5e-13 AT1G78510 415 / 8e-144 solanesyl diphosphate synthase 1 (.1.2) Potri.011G101200 [exp] 64 / 6e-13 AT1G17050 397 / 2e-137 solanesyl diphosphate synthase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0613 [flax] [poplar] Terp_synthase PF00348 [flax] [poplar] polyprenyl_synt Polyprenyl synthetase
Representative CDS sequence Show only first row Show all	>Lus10009136 pacid=23150074 polypeptide=Lus10009136 locus=Lus10009136.g ID=Lus10009136.BGIv1.0 annot-version=v1.0 ATGGAATGTCGATATGGCGAGAAAGTGAGTTTGGAGGACTTGGAGTACATCCACATCCACAAGACCGCGAGGCTGCTAGAGGCGGCGGTGGTTTGCGGGG CGATCTTGGGGGGAGCCGACGACGAGAGCGTGAAGAAAGTGAGGAAATACTCGAGGTGCGTCGGATTACTATTCCAAGTGGTGGACGATATTCTAGACGT GACGAAGTCCTCGGAGGAGTTGGGGAAGACCGCCGGCAAGGATCTGGCGACGGACAAGGCGACGTATCCGAAGCTGTTGGGTTTGGACGGCGCGAGAAAG TTCGCAGCCAAGTTGGTGGATGAAGCCAATAAGGAGTTGGCTGGCTTTGATCCCGTGAAGGCAGCACCTCTCTATCATTTTGCTAATTACATTGCTACCC GACAAAATTAA
AA sequence Show only first row Show all	>Lus10009136 pacid=23150074 polypeptide=Lus10009136 locus=Lus10009136.g ID=Lus10009136.BGIv1.0 annot-version=v1.0 MECRYGEKVSLEDLEYIHIHKTARLLEAAVVCGAILGGADDESVKKVRKYSRCVGLLFQVVDDILDVTKSSEELGKTAGKDLATDKATYPKLLGLDGARK FAAKLVDEANKELAGFDPVKAAPLYHFANYIATRQN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18620			Terpenoid synthases superfamil...		Lus10009136 [exp]	0	1
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10023259 [exp]	1.0	0.9944
AT4G36810		GGPS1	geranylgeranyl pyrophosphate s...		Lus10009137 [exp]	2.0	0.9880
AT4G19880			Glutathione S-transferase fami...		Lus10014304 [exp]	2.4	0.9891
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Lus10028759 [exp]	3.9	0.9885
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030805 [exp]	4.5	0.9798
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Lus10013593 [exp]	4.5	0.9857
AT1G16120		WAKL1	wall associated kinase-like 1 ...		Lus10008105 [exp]	6.5	0.9847
					Lus10000527 [exp]	7.7	0.9812
AT2G02240		MEE66	maternal effect embryo arrest ...		Lus10023207 [exp]	8.0	0.9833
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	8.8	0.9818

Compare expression of checked genes

Lus10009136 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.